Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00017 ATGTTCCAACAAAGACTTAACAATAATATTACTAGTAGCGAGCTAGATCAAATGTTGCATATGCTATCCTCTTCTTCTTTTTCTAATCCCATGCCATTCTCAACAACTTCAATGGACCAATCAAATTCCAAGTGGAAACCACATGTTGAAATAGCTCCGAATTGTCCTCGTTGCGCTTCGACAAACACTAAATTCTGTTACTACAATAATTACAGCCTCTCGCAGCCGCGGTATTTCTGTAAAGGCTGTAGGCGTTATTGGACGAAAGGCGGCTCTCTTCGAAATGTCCCTGTTGGAGGTGGCTGTCGCAAACATCGTCGTGGAAGGGTGGTCAGAAATTCACAAACTGGCCACCTTTCCACAGATGGCTCTGATTCTGTTGATGGTGATCAACAGAATCAAAATAATGTTTCACGCGATATAGATATGGCCGTTGTTTTCGCCAAATTCTTAAACCAAAACACAAGTAGTACTCATGGTGATCATGGGGAAATAGAAACCGAGAGTGAGGCTAACAATAATAATGGATCAACTTCTTCCAACAATATGAACAATTTGTCGTCGACACCGGACAGCACTGAAACTGAGAATGATGCAGTGGTCCAGCTCCAGCCTGATGCAATGGTTGTAAATGGGGATCCTTTTGATCCGGAATTGAGTTTGAGTGAGTTTGAGGGGTTTCTGGGTGTTGATGAAGATGTGGTTCAAGATGTTCTATGGCATGATTCTTCTGATGCTATGATGGTGTCAACATGGCAACAACAACCATCATCCATGATGCAAATGGAGATGGATTACTCTATGCCATTGCCATTAAATGAGGGTGATAATATTCATGACCAATTATTATTACCTGTTACTGTCAATTCAAATTCTGCTAGTGGCAATTTGATAAATGAGAGTTGGAACACTTCTTGGGATTGTTTTGATCTTTCAACCATGGAAGTTTTCTCGTCGAACTCAAGACCTTAA 972 0.4105 MFQQRLNNNITSSELDQMLHMLSSSSFSNPMPFSTTSMDQSNSKWKPHVEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKHRRGRVVRNSQTGHLSTDGSDSVDGDQQNQNNVSRDIDMAVVFAKFLNQNTSSTHGDHGEIETESEANNNNGSTSSNNMNNLSSTPDSTETENDAVVQLQPDAMVVNGDPFDPELSLSEFEGFLGVDEDVVQDVLWHDSSDAMMVSTWQQQPSSMMQMEMDYSMPLPLNEGDNIHDQLLLPVTVNSNSASGNLINESWNTSWDCFDLSTMEVFSSNSRP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00017 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 192 IPR045174 GO:0003700|GO:0006355
Vivi44g00017 323 MobiDBLite consensus disorder prediction 169 197 - -
Vivi44g00017 323 MobiDBLite consensus disorder prediction 97 134 - -
Vivi44g00017 323 MobiDBLite consensus disorder prediction 157 197 - -
Vivi44g00017 323 Pfam Dof domain, zinc finger 53 106 IPR003851 GO:0003677|GO:0006355
Vivi44g00017 323 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Vivi44g00017 323 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Vivi44g00017 323 MobiDBLite consensus disorder prediction 113 134 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00017 19 152 C2C2-Dof Transcription Factor Family AT3G52440 49.650 3.00e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi44g00017 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00017 - - mtr:11416134 404.445