Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00010 ATGTCGAACAATGCACTAAATTTTCTTATCTTGTTTCTAAGTATCTCTTTGTTTCCATTCATTTCTTCTCTTAACCAAGAAGGTCTCTCTTTACTTTCATGGCTTTCGACTTTCAATTCTTCGAACTCGGACACTAGTACTACTTTCTCATCATGGGATCCAGCTCACAGAAATCCTTGCAGATGGGATTATATAAAGTGTTCTGCAGAAGAGTTTGTTGAAGAGATCGTAATAACGTCTATCGATCTTCGTAGCGAGTTTCCTACACAGTTTCTTTCTTTTAACCATCTTAGAACTCTTGTTATCTCGAATGGAAATCTCACAGGTGAGATTCCGAGTTCTGTTGGAAACTTGTCGTCGTCACTGGTTACTCTTGATCTTAGTTTCAATAGTTTAACAGGAAAAATACCGGATGAAATAGGAAAGTTATATGAACTGAGATGGTTATCGTTGAATTCGAATTCGTTACACGGTGGAATTCCAACCACGATTGGTAACTGTTCGAAGCTTCAGCACTTGGAACTGTTTGACAACCAGCTTTCTGGTATGATTCCTGGAGAAATAGGACAGTTGAAGGCTCTTGAGTCGCTGCGAGCCGGTGGAAACCAAGGTATTTTCGGAGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTAGTTTTTCTCGGACTTGCGGTTACTGGAATTTCCGGTGAGATTCCGGCAAGTATAGGAGAACTACAAAATCTGAAGACACTTTCAGTCTACACAGCACATCTCACAGGTCAAATTCCAGCAGAGATTCAAAACTGTTCAGCTTTGGAAGATTTGTTTCTGTATGAAAATCAGCTTTCTGGAAAAATTCCTTACGAATTCGGTTCCATGCAAAGCCTTAAGAGGGTACTGCTGTGGAAGAACAATTTAACTGGAACGATTCCGGAAAGCCTCGGAAACTGTACAAATCTGAAGGTGATTGATTTCTCTTTGAATTCTCTGATTGGTAAGTTACCTTTGACTCTAAGTAATCTTCTCTCATTGGAGGAATTTCTTTTGTCTGATAATAACATTTACGGCGAAATACCTTCATATGTTGGCAATTTTTCCAAGCTGAAGCAACTTGAGCTCGATAATAACCGATTCTCTGGCGAGATTCCGTCTGTTATGGGGAACTTGAAGGAACTCACTCTTTTCTATGCATGGCAAAATCAGCTTAATGGAAATATACCAACAGAATTATCTAACTGTCAGAAACTCGAAGCAGTTGATCTTTCGCACAATTTCCTCACCGGTCCAATTCCGAATTCTCTCTTTCATCTGCAGAATTTAACTCAGCTGTTGCTGATATCAAACAGTCTTTCAGGTCAAATTCCGCCCGATATTGGAAAATGCACAAGCTTGATCAGGTTAAGACTTGGATCAAACAATTTCACCGGTCAAATTCCGCGAGAAATTGGCCTTTTGAAAAGTTTAACCTTTCTGGAGCTGTCAGATAATCAACTCAGTGAAGATATTCCTTATGAGATAGGTAACTGTGCTCATTTAGAAATGCTTGACTTGCATAAAAATGAGCTTCAAGGAACCATTCCTTCATCATTAAAATTCTTAGTCGATCTTAACGTCTTGGATCTTTCTTCAAACCGAATCACCGGAAGCATTCCCAAGAGCTTAGGCAAGCTTACGTCGTTAAATAAGTTGATTCTAAGCGGAAACCTTATCGCCGGTTCGATCCCTCAGTCGCTAGGACTTTGTAAGGATTTGCAGTTGCTTGACTTAAGTAACAATAAGATCATAGGTTCTATTCCCAGCGAGATTGGTTACTTGCAAGGATTGGATATACTATTGAACTTGAGTTGGAATTCTCTTACAGGTTCAATCCCAAAGACTTTTTCGAATCTCTCAAAACTTTCAATCTTGGACCTATCTTACAACAAGATCACAGGTACTCTTTTAGTACTTGGTAACCTTGATAATCTTGTGTCTCTAAATGTTTCATACAATAGATTCTCTGGTACTCTTCCCAACACGAAGTTCTTCGAAGATTTACCTTCTGCTGCATTCGCCGGCAACCCTGATCTTTGCATTAACAGCAAGTGTCGTGCGAGCGGAAGTCTCGAAGGAAACAAATCGATAAGAAATATTATCATCTACACTTTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCACTAAGGATTCAAGGGGACAGTTTTTATGGGAGAAATAATTTCGATGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAGAAGCTTAACTTCAATATCAACGATGTGGTTTCCAAGTTGTCAGATTCAAATATCGTCGGAAAAGGTTGCTCGGGTGTTGTTTACCGCGTAGAGACTCCGACAAAACAGATTATTGCGGTGAAGAAGCTATGGCCAATAAAGAATGAAGAGCCACCAGAGCGAGATTTTTTTACCGCAGAAGTTCAGACGCTTGGATCGATAAGGCATAAGAACATAGTAAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGATTGCTGTTGTTTGATTACATATGTAATGGAAGTTTGTTTGGATTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTTATGGTTTGGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCATCGCGACGTTAAGGCTAACAACATCTTGGTCGGTCCACAGTTTGAAGCTTTTCTTGCTGATTTCGGCCTTGCAAAATTGGTCATTTCCTCAGATTGCTCAAGAGCCTCACATGTCGTTGCAGGTTCTTACGGATACATAGCTCCTGAATATGGATACAGTTCAAGGATCACGGAAAAGAGCGACGTGTACAGTTACGGTGTCGTGCTTCTCGAGATGTTAACCGGAATGGAACCAACCGATAACAGAATTCCAGAGAATGCTCACATTGTAACATGGGTTATCGGCGAAATCAGAGAGAAGAAAAGCGAATTCACATCTATTCTTGATCAGCAATTACTATTGCAATGTGGAACAAGAACACAAGAGATGCTTCAAGTGTTAGGTGTGGCCCTTCTCTGTGTGAATCCATCACCAGAAGAAAGACCAACAATGAAAGATGTAACAGCAATGCTCAAAGAGATTAGCCATGAAAATGATGATATAGATAAACCCAATCTTCTGCATAATAAAGGCATGGTTACAAATCCAAAAGCAGCGGTTCATTGTTCTAGTTTCTCAAGATCATGTGAACTTTTGATAGAATCATCATCTTCTTCTTCATAG 3279 0.3962 MSNNALNFLILFLSISLFPFISSLNQEGLSLLSWLSTFNSSNSDTSTTFSSWDPAHRNPCRWDYIKCSAEEFVEEIVITSIDLRSEFPTQFLSFNHLRTLVISNGNLTGEIPSSVGNLSSSLVTLDLSFNSLTGKIPDEIGKLYELRWLSLNSNSLHGGIPTTIGNCSKLQHLELFDNQLSGMIPGEIGQLKALESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGQIPAEIQNCSALEDLFLYENQLSGKIPYEFGSMQSLKRVLLWKNNLTGTIPESLGNCTNLKVIDFSLNSLIGKLPLTLSNLLSLEEFLLSDNNIYGEIPSYVGNFSKLKQLELDNNRFSGEIPSVMGNLKELTLFYAWQNQLNGNIPTELSNCQKLEAVDLSHNFLTGPIPNSLFHLQNLTQLLLISNSLSGQIPPDIGKCTSLIRLRLGSNNFTGQIPREIGLLKSLTFLELSDNQLSEDIPYEIGNCAHLEMLDLHKNELQGTIPSSLKFLVDLNVLDLSSNRITGSIPKSLGKLTSLNKLILSGNLIAGSIPQSLGLCKDLQLLDLSNNKIIGSIPSEIGYLQGLDILLNLSWNSLTGSIPKTFSNLSKLSILDLSYNKITGTLLVLGNLDNLVSLNVSYNRFSGTLPNTKFFEDLPSAAFAGNPDLCINSKCRASGSLEGNKSIRNIIIYTFLGVILTSAIVTCGVILALRIQGDSFYGRNNFDEVEMEWSFTPFQKLNFNINDVVSKLSDSNIVGKGCSGVVYRVETPTKQIIAVKKLWPIKNEEPPERDFFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGTAYGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVISSDCSRASHVVAGSYGYIAPEYGYSSRITEKSDVYSYGVVLLEMLTGMEPTDNRIPENAHIVTWVIGEIREKKSEFTSILDQQLLLQCGTRTQEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEISHENDDIDKPNLLHNKGMVTNPKAAVHCSSFSRSCELLIESSSSSS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00010 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 203 328 - -
Vivi44g00010 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 202 - -
Vivi44g00010 1092 Gene3D Ribonuclease Inhibitor 202 266 IPR032675 -
Vivi44g00010 1092 ProSitePatterns Protein kinases ATP-binding region signature. 774 802 IPR017441 GO:0005524
Vivi44g00010 1092 SUPERFAMILY Protein kinase-like (PK-like) 764 1059 IPR011009 -
Vivi44g00010 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 410 695 - -
Vivi44g00010 1092 SUPERFAMILY L domain-like 47 401 - -
Vivi44g00010 1092 ProSiteProfiles Leucine-rich repeat profile. 578 600 IPR001611 GO:0005515
Vivi44g00010 1092 Pfam Leucine rich repeat 607 661 IPR001611 GO:0005515
Vivi44g00010 1092 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Vivi44g00010 1092 Pfam Leucine rich repeat 146 203 IPR001611 GO:0005515
Vivi44g00010 1092 SMART LRR_typ_2 648 681 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 432 456 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 336 360 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 480 504 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 552 576 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 600 624 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 528 551 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 625 647 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 288 312 IPR003591 -
Vivi44g00010 1092 SMART LRR_typ_2 143 167 IPR003591 -
Vivi44g00010 1092 SMART LRR_sd22_2 576 602 - -
Vivi44g00010 1092 SMART LRR_sd22_2 336 362 - -
Vivi44g00010 1092 SMART LRR_sd22_2 480 499 - -
Vivi44g00010 1092 SMART LRR_sd22_2 528 549 - -
Vivi44g00010 1092 SMART LRR_sd22_2 625 650 - -
Vivi44g00010 1092 Gene3D Ribonuclease Inhibitor 431 697 IPR032675 -
Vivi44g00010 1092 Pfam Protein kinase domain 771 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi44g00010 1092 SMART serkin_6 768 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi44g00010 1092 Gene3D Phosphorylase Kinase; domain 1 739 846 - -
Vivi44g00010 1092 Pfam Leucine Rich Repeat 410 432 IPR001611 GO:0005515
Vivi44g00010 1092 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515
Vivi44g00010 1092 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 392 1044 - -
Vivi44g00010 1092 Gene3D Transferase(Phosphotransferase) domain 1 847 1064 - -
Vivi44g00010 1092 ProSiteProfiles Protein kinase domain profile. 768 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi44g00010 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Vivi44g00010 1092 Gene3D Ribonuclease Inhibitor 23 201 IPR032675 -
Vivi44g00010 1092 SUPERFAMILY RNI-like 329 666 - -
Vivi44g00010 1092 Pfam Leucine rich repeat N-terminal domain 25 68 IPR013210 -
Vivi44g00010 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 847 1061 - -
Vivi44g00010 1092 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
Vivi44g00010 1092 Gene3D Ribonuclease Inhibitor 267 430 IPR032675 -
Vivi44g00010 1092 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 744 846 - -
Vivi44g00010 1092 PRINTS Leucine-rich repeat signature 625 638 - -
Vivi44g00010 1092 PRINTS Leucine-rich repeat signature 531 544 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00010 23 1082 Receptor kinase-like Gene Family AT5G56040 46.310 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi44g00010 Pkinase 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00010 - - gmx:100807225 1727.99