Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi448g00002 ATGCTTGAAGATCCTCCTAAGACTCCCTCAGCTGAAACCGAGAATTCATTACCGAAAGCTTCTACAAATGGAGAACAAAGTGAGACTAGTGTTTCTGAAGATAAAACCCTGAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGCATGGACACCAAGTTCTGTTACTTCAACAATTACAATGTTAACCAGCCCCGTCATTTTTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGTACAATGAGAAATGTTCCTGTTGGTGCAGGGCGCCGCAAGAACAAGACCTCACCTACCGCGCATTATAGACACCTGATGATTCCTGAAGGAGTTAAGCTTAATTCCCCTAATGGATTGCATGGTTCTGTCTTGGCATTCGATTCAGATTCGCCTCTTTGTAATACCATGACTTCTGTCTTGAAAATTGGCGAGAGGGCGCCAAATTGTGTACCAAATAGTTTTCATCACCCAACTGGACCACCAAATACTTTTGTTTCCTATAGCGGAGAAGATGATCACTCGATTGGAGTTTCTGTTACAACTTCAACTTCATCCGAGAGGAAGAGTCACACCGACACAAATGGATCGATGGATAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCATTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACATTTTGTCCACCAAACTATCCGTTAGCATTCTATCCTCCACCGGCATATTGGGGTTGTGTGCCACCTCCATGGAGCATGCCATGTATCTCACCAAATAGTCCTTCTGTTAACCAAAGTGACTCTCCCCAATATTCACCTACTTTGGGAAAACACTCGAGGGACGGAAACATCATTACCTCGGTAAACTCACCTAACGAAAAGTCTGATAAAGAACACAATAGTACCGAAAGCAGCGTTTTGATCCCCAAAACACTAAGATTCGATGATCCAAACGAAGCTGCAAAGAGTTCGTTATGGTCAAAGCTCGGGATCAGTAACGACAAAACCAACTCTCTCAATGGAGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAAGACAACAATCACTCGGCCGAAGCGTCGCCGCTGATGTATGCCAACCCTGCAGCTTTATCGCGGTCTCGTACCTTCCACGAGGGAACCTAA 1158 0.4421 MLEDPPKTPSAETENSLPKASTNGEQSETSVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPTAHYRHLMIPEGVKLNSPNGLHGSVLAFDSDSPLCNTMTSVLKIGERAPNCVPNSFHHPTGPPNTFVSYSGEDDHSIGVSVTTSTSSERKSHTDTNGSMDKRVEGFPPQLQYIPSPILPYPWNSAMPPPTFCPPNYPLAFYPPPAYWGCVPPPWSMPCISPNSPSVNQSDSPQYSPTLGKHSRDGNIITSVNSPNEKSDKEHNSTESSVLIPKTLRFDDPNEAAKSSLWSKLGISNDKTNSLNGGSMFNAFQSKGKDNNHSAEASPLMYANPAALSRSRTFHEGT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi448g00002 385 MobiDBLite consensus disorder prediction 263 308 - -
Vivi448g00002 385 MobiDBLite consensus disorder prediction 1 36 - -
Vivi448g00002 385 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Vivi448g00002 385 PANTHER CYCLIC DOF FACTOR 2 11 384 IPR045174 GO:0003700|GO:0006355
Vivi448g00002 385 MobiDBLite consensus disorder prediction 9 30 - -
Vivi448g00002 385 MobiDBLite consensus disorder prediction 179 203 - -
Vivi448g00002 385 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Vivi448g00002 385 MobiDBLite consensus disorder prediction 263 294 - -
Vivi448g00002 385 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi448g00002 20 383 C2C2-Dof Transcription Factor Family AT5G39660 44.186 4.01e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi448g00002 zf-Dof 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi448g00002 - - gmx:100813315 470.314