Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi448g00001 ATGTCAGAGGTTAAAGACCCTGCCATAAAGCTATTTGGAAGGACAATTCCGCTTCCACTCATCATATCTAATGACTCTTCATCTTCCTCTCCTTCTTCTTCTCCACCAGAATTCATCTCTGCTATACAACAAGAGGAACCATCAAGGAAAGAACTCATCACAGCACAAGATGAAGATGCCTCGCCACAAACCGCGGAGGATTTAAAATCTCTCGCAGCATGTTCACCCATGCTTGAAGATCCTCCTAAGACTCCCTCAGCTGAAACCGAGAATTCATTACCGAAAGCTTCTACAAATGGAGAACAAAGTGAGACTAGTGTTTCTGAAGATAAAACCCTGAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGCATGGACACCAAGTTCTGTTACTTCAACAATTACAATGTTAACCAGCCCCGTCATTTTTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGTACAATGAGAAATGTTCCTGTTGGTGCAGGGCGCCGCAAGAACAAGACCTCACCTACCGCGCATTATAGACACCTGATGATTCCTGAAGGAGTTAAGCTTAATTCCCCTAATGGATTGCATGGTTCTGTCTTGGCATTCGATTCAGATTCGCCTCTTTGTAATACCATGACTTCTGTCTTGAAAATTGGCGAGAGGGCGCCAAATTGTGTACCAAATAGTTTTCATCACCCAACTGGACCACCAAATACTTTTGTTTCCTATAGCGGAGAAGATGATCACTCGATTGGAGTTTCTGTTACAACTTCAACTTCATCCGAGAGGAAGAGTCACACCGACACAAATGGATCGATGGATAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCATTTTGCCTTATCCATGGAATTCTGCAATGCCTCCTCCTACATTTTGTCCACCAAACTATCCGTTAGCATTCTATCCTCCACCGGCATATTGGGGTTGTGTGCCACCTCCATGGAGCATGCCATGTATCTCACCAAATAGTCCTTCTGTTAACCAAAGTGACTCTCCCCAATATTCACCTACTTTGGGAAAACACTCGAGGGACGGAAACATCATTACCTCGGTAAACTCACCTAACGAAAAGTCTGATAAAGAACACAATAGTACCGAAAGCAGCGTTTTGATCCCCAAAACACTAAGATTCGATGATCCAAACGAAGCTGCAAAGAGTTCGTTATGGTCAAAGCTCGGGATCAGTAACGACAAAACCAACTCTCTCAATGGAGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAAGACAACAATCACTCGGCCGAAGCGTCGCCGCTGATGTATGCCAACCCTGCAGCTTTATCGCGGTCTCGTACCTTCCACGAGGGAACCTAA 1386 0.4423 MSEVKDPAIKLFGRTIPLPLIISNDSSSSSPSSSPPEFISAIQQEEPSRKELITAQDEDASPQTAEDLKSLAACSPMLEDPPKTPSAETENSLPKASTNGEQSETSVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPTAHYRHLMIPEGVKLNSPNGLHGSVLAFDSDSPLCNTMTSVLKIGERAPNCVPNSFHHPTGPPNTFVSYSGEDDHSIGVSVTTSTSSERKSHTDTNGSMDKRVEGFPPQLQYIPSPILPYPWNSAMPPPTFCPPNYPLAFYPPPAYWGCVPPPWSMPCISPNSPSVNQSDSPQYSPTLGKHSRDGNIITSVNSPNEKSDKEHNSTESSVLIPKTLRFDDPNEAAKSSLWSKLGISNDKTNSLNGGSMFNAFQSKGKDNNHSAEASPLMYANPAALSRSRTFHEGT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi448g00001 461 MobiDBLite consensus disorder prediction 85 106 - -
Vivi448g00001 461 MobiDBLite consensus disorder prediction 255 279 - -
Vivi448g00001 461 MobiDBLite consensus disorder prediction 339 370 - -
Vivi448g00001 461 Pfam Dof domain, zinc finger 118 174 IPR003851 GO:0003677|GO:0006355
Vivi448g00001 461 MobiDBLite consensus disorder prediction 20 112 - -
Vivi448g00001 461 PANTHER CYCLIC DOF FACTOR 2 1 460 IPR045174 GO:0003700|GO:0006355
Vivi448g00001 461 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Vivi448g00001 461 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Vivi448g00001 461 MobiDBLite consensus disorder prediction 20 41 - -
Vivi448g00001 461 MobiDBLite consensus disorder prediction 339 384 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi448g00001 1 459 C2C2-Dof Transcription Factor Family AT3G47500 40.741 4.10e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi448g00001 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi448g00001 - - gmx:100813315 528.48