Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi444g00020 ATGGTGTTGAGAAAAGTGGGGAAGTATGAAATTGGAAGAACAATTGGTGAAGGAACCTTCGCGAAGGTTAAGTTCGCTCAGAATACTGAAACTGGTGAAAGCGTTGCTATGAAGATTCTCGATCGTAGCACCATCATCAAGCATAAAATGGCCGATCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGACATCCATATGTTGTTCGCCTCCATGAGGTTCTGGCCAGCCGTACTAAGATTTATATCATATTGGAATTCATCACAGGTGGTGAATTGTTCGATAAAATTGTACACCACGGGCGTCTCAGTGAAGCTGAATCTAGGAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCGGAAAACCTTTTACTTGATTCACTAGGAAATATGAAGATTTCAGATTTTGGTTTGAGTGCTTTGCCAGAAAAAGGGGTTAGTATGCTGCGTACAACTTGTGGAACTCCAAATTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCCAGCAGATGTTTGGTCCTGTGGTGTTATACTCTATGTTCTAATGGCGGGATATCTTCCCTTTGATGAGCTTGATCTTACCACGCTATACAGTAAGATTGACAAAGCGGAGTTTTCATGCCCTGCTTGGTTTCCTATGGGAGCGAAATCTTTGATACAGAGAATTTTGGACCCAAACCCTGAACATCGTATTACCATTGAGCAAATTAGAAATGACGAGTGGTTCCAAAAAAGCTATGTTCCTGTCCATCTCCTCGAGTATGAAGATGTAAATCTGGACGATATAAATGCTGCGTTTGACAGTGATGAGGATCAGAGGGATAATCCGCAATGTGAGGTTGAGGACACGGGTCCTTTAGTTCTTAATGCATTCGACATGATAATGTTATCTCAAGGCTTAAACCTTGCTTCAATCTTCGATCGGGGACAGGACACTATGAAATACCAAACACGCTTCGTCACTCAAAAGCCAGTGAAAGTGGTTTTAACAAGTATGGAAGTTGTGGCACAATCAATGGGATTCAAGACGCATATTCGTAACTATAAGATGAGAATAGAGGGTATTTCAGCAAATAAGAAATCTCATTTCTCAGTTATATTGGAAGTTTTTGAAGTTGCTCCCACATTTTTCATGGTGGATATTCAGAAAGCAGCTGGAGATTCCAGTGAATATCTCAAGTTTTACAAGAATTTTTCTAGCAACCTCGAAGATATCATTTGGAAATCGCCTTATGAAACAAGCAAATTGAAGACCCCCAAGAATAGAAGCAAAAGACCCTAG 1341 0.4042 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKILDRSTIIKHKMADQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNMKISDFGLSALPEKGVSMLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLMAGYLPFDELDLTTLYSKIDKAEFSCPAWFPMGAKSLIQRILDPNPEHRITIEQIRNDEWFQKSYVPVHLLEYEDVNLDDINAAFDSDEDQRDNPQCEVEDTGPLVLNAFDMIMLSQGLNLASIFDRGQDTMKYQTRFVTQKPVKVVLTSMEVVAQSMGFKTHIRNYKMRIEGISANKKSHFSVILEVFEVAPTFFMVDIQKAAGDSSEYLKFYKNFSSNLEDIIWKSPYETSKLKTPKNRSKRP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi444g00020 446 Gene3D Transferase(Phosphotransferase) domain 1 3 304 - -
Vivi444g00020 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi444g00020 446 Gene3D Kinase associated domain 1, KA1 305 428 - -
Vivi444g00020 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi444g00020 446 FunFam Non-specific serine/threonine protein kinase 2 302 - -
Vivi444g00020 446 FunFam Non-specific serine/threonine protein kinase 302 428 - -
Vivi444g00020 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Vivi444g00020 446 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Vivi444g00020 446 CDD CIPK_C 309 424 - -
Vivi444g00020 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vivi444g00020 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Vivi444g00020 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 413 - -
Vivi444g00020 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi444g00020 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi444g00020 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi444g00020 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 81.701 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi444g00020 Pkinase 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi444g00020 - - gmx:100813117 792.727