Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi444g00004 ATGTCTCTACCAAGGCTAGGAATAGGGGATGATGAAGGTGAAAGCAATGTTACTTTATTGGTTTCTTCTTCTTCTTCTTCAACCTCAATGGAAAAAAGTGTGTGTTTGAATTTGAATGGTTCAATTTCAAAGCCTTCAAAGCCAAAAGAGTTTAACTACATGGGATTATCATGTGACTCTTCATCTTCAGTGGATAGTTCAGTTCCAAAGATTCAGGCTTTTGAAGATGAGGCTGAAAGAAAGTTTAATCTTAAAGCTACTGAGCTTAGATTGGGACTTCCAGGGTCAGTGTCTCCTGAAAGGGATTCTTCAGATCTTTGTTTGAGAAGTTTTGATGAAAAGCCTCTTTTTCCTTTGCATCCTCAAAAAGATGAATCAAAGCCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTCTCAGAGGGGAAAATGAAGCCTGGCTCGAATATGCTTGAGAATGTTGCGGCGCTGCAAGGAAAAGGCAATGAAATAGCGACAGTTAAGGTTGGTCTTGAGAGGCCGAACGGTGTCGGTGAAAGCAGACCTAATCTTAATGGTTCTGCAAATAATGGAAATAGCATTGCTCCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTCGGAAAAACTCATTGACAACTGCATCAAAGAACACCGAAGAGGTTGACGGAAAACTAGGATTAGGAGGTGCGGTGTTTGTGAAAGTTAGCATGGATGGTGCTCCTTATTTGAGAAAAGTAGATTTGAAGAATTACACTGCATATTCAGAACTATCTTCTTCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGACAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACAAAGCTGAGAGATCTGCTTCATGGGTCAGAATATGTTATTACTTACGAGGATAAAGACGGTGACTGGATGCTTGTGGGCGATGTTCCATGGGAGATGTTTATTGATACATGCAGGAGACTAAGGATCATGAAAAGCTCCGAAGCGATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAG 1074 0.4078 MSLPRLGIGDDEGESNVTLLVSSSSSSTSMEKSVCLNLNGSISKPSKPKEFNYMGLSCDSSSSVDSSVPKIQAFEDEAERKFNLKATELRLGLPGSVSPERDSSDLCLRSFDEKPLFPLHPQKDESKPAVLGNKRGFSDAMNVFSEGKMKPGSNMLENVAALQGKGNEIATVKVGLERPNGVGESRPNLNGSANNGNSIAPATKAQVVGWPPIRSFRKNSLTTASKNTEEVDGKLGLGGAVFVKVSMDGAPYLRKVDLKNYTAYSELSSSLEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSEAIGLAPRAVEKSKSRN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi444g00004 357 Gene3D - 238 351 - -
Vivi444g00004 357 MobiDBLite consensus disorder prediction 178 198 - -
Vivi444g00004 357 Pfam AUX/IAA family 87 348 IPR033389 -
Vivi444g00004 357 SUPERFAMILY CAD & PB1 domains 236 338 - -
Vivi444g00004 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 83 344 IPR003311 GO:0005634|GO:0006355
Vivi444g00004 357 FunFam Auxin-responsive protein 237 349 - -
Vivi444g00004 357 ProSiteProfiles PB1 domain profile. 240 339 IPR000270 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi444g00004 224 347 B3 DNA Binding Superfamily AT4G23980 29.839 8.68e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi444g00004 AUX_IAA 1.5e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi444g00004 K14484 - gmx:100818881 452.595