Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi443g00003 ATGGAAGGTTTATTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCATTCTTTGATGCAGTCTCTTGGAGGATGTTCTTACATTTGTGTTTGGACATATGATACAATTTTACCAAATCGTTTGTCTTTCTTGGATGGTATCTACAATGTGATAAGCAGCCACCAACCAAGTTCTTCGTTGGGAAGCCTCGCGCAACAGCTTTTCGATCAGTACACGATTTTATCATTCGATATCAATGATGACCGGATTCCTGGACTAGCTTTTAGGAATCAACGTCCTTATATAGAGCTGCAGCAGCTCGAGCTTCTGACACTGTCATCAACTGAAATACAGACGCAATTTTATAAGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAACTGATATTCAAACAGCACTTAGGAATTTATTTCCTGAAGATTTTTCAAGACAAATACAACAAATTGATCAGAATAATAATAATAATCCGCCTTCATCATCTTCATCTTCGATGAGATCATTATCAACAGCCGGTAGTCCAGAATATTCATCTCTCATGTTCATAAATCCACCTGGAACTTCTCCATCGTCACATAACTTTCCTGATCATATCCTTGGAGGAGTAAACATTCCTCCAATGAGACCTGTTTCAAACACACTACCCTTTCAACTTCAACAACAACCTCAAATCACACCGACACAATTGTTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCAGCAAAATCACGCGGCACGTCCAGAAGCTAGTGCGTTCGGAAGGTATAGAAACGATAAAAGTCCTATTATTATAGGCTCGAATTTTCGAAGACAAAGTTTGATGAAGAGATCGTTCGCGTTCTTCAGAAACTTGAATTTGATGAGACTGAAAGAACGCAATCAAGCGACGCGTCCTTCGAGTAACCAACTTCATCATATGATATCGGAGCGACGAAGGCGCGAGAAGCTTAACGATAACTTCCAAGCACTTAGGGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCGAAGGAGACACTAAGGTCGTTGATGGGAGAAATAGAGAAACTAAGCAAAAGAAACCAAGAGTTGTTGATGTCACAAACGTCGGCTGCTTCGAATAAAGAAACTATGAAATTCTCGTCGAATGAGAGAATTAACGTGCGAGTTTTGCATGTAGCGGAATCAAGTTCATCGGAAGATGAACCAATGACAGTGGAGTTACAAGTGAATGTGCTAGGACAAGTTTCTCAAGCTGATATGTTGATTAGGTTATTAGAATTCTTAAATCAAGTTCATCATGTCAATTTGATTTCAATGGATGCAACAAATACAAATACAAATACTTCACAAGACAATAATTATCTTCATCAAATAACATTCAGATTAAGGATTACTCAGGTGAGTGAATGGGACGAGGAGGCCTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTACCAAGTGGACCAAAATCTATGA 1575 0.3924 MEGLFSLPVAVRTEFIHSLMQSLGGCSYICVWTYDTILPNRLSFLDGIYNVISSHQPSSSLGSLAQQLFDQYTILSFDINDDRIPGLAFRNQRPYIELQQLELLTLSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSQTDIQTALRNLFPEDFSRQIQQIDQNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFINPPGTSPSSHNFPDHILGGVNIPPMRPVSNTLPFQLQQQPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQNHAARPEASAFGRYRNDKSPIIIGSNFRRQSLMKRSFAFFRNLNLMRLKERNQATRPSSNQLHHMISERRRREKLNDNFQALRALLPQGTKKDKASILITAKETLRSLMGEIEKLSKRNQELLMSQTSAASNKETMKFSSNERINVRVLHVAESSSSEDEPMTVELQVNVLGQVSQADMLIRLLEFLNQVHHVNLISMDATNTNTNTSQDNNYLHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDQNL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi443g00003 524 Coils Coil 368 395 - -
Vivi443g00003 524 Gene3D - 328 404 IPR036638 GO:0046983
Vivi443g00003 524 SMART finulus 335 384 IPR011598 GO:0046983
Vivi443g00003 524 CDD bHLH_AtbHLH_like 334 386 IPR045239 -
Vivi443g00003 524 Pfam Helix-loop-helix DNA-binding domain 333 378 IPR011598 GO:0046983
Vivi443g00003 524 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Vivi443g00003 524 MobiDBLite consensus disorder prediction 165 208 - -
Vivi443g00003 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 396 IPR036638 GO:0046983
Vivi443g00003 524 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 514 IPR044658 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi443g00003 12 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.332 5.06e-91 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi443g00003 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi443g00003 - - vvo:131631482 942.569