Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi443g00002 ATGGAAGGTTTATTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCATTCTTTGATGCAGTCTCTTGGAGGATGTTCTTACATTTGTGTTTGGACATATGATACAATTTTACCAAAGTATATATACATATTTAATATATCTATATGCATACACCTACCTACATTATTATTATTATATATAAGGTTGCTGATTCTACTTATACAACGGTTTGATTTTATTTTTTTATTTCTTTGGACTAGTCGTTTGTCTTTCTTGGATGGTATCTACAATGTGATAAGCAGCCACCAACCAAGTTCTTCGTTGGGAAGCCTCGCGCAACAGCTTTTCGATCAGTACACGATTTTATCATTCGATATCAATGATGACCGGATTCCTGGACTAGCTTTTAGGAATCAACGTCCTTATATAGAGCTGCAGCAGCTCGAGCTTCTGACACTGTCATCAACTGAAATACAGACGCAATTTTATAAGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAACTGATATTCAAACAGCACTTAGGAATTTATTTCCTGAAGATTTTTCAAGACAAATACAACAAATTGATCAGAATAATAATAATAATCCGCCTTCATCATCTTCATCTTCGATGAGATCATTATCAACAGCCGGTAGTCCAGAATATTCATCTCTCATGTTCATAAATCCACCTGGAACTTCTCCATCGTCACATAACTTTCCTGATCATATCCTTGGAGGAGTAAACATTCCTCCAATGAGACCTGTTTCAAACACACTACCCTTTCAACTTCAACAACAACCTCAAATCACACCGACACAATTGTTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCAGCAAAATCACGCGGCACGTCCAGAAGCTAGTGCGTTCGGAAGGTATAGAAACGATAAAAGTCCTATTATTATAGGCTCGAATTTTCGAAGACAAAGTTTGATGAAGAGATCGTTCGCGTTCTTCAGAAACTTGAATTTGATGAGACTGAAAGAACGCAATCAAGCGACGCGTCCTTCGAGTAACCAACTTCATCATATGATATCGGAGCGACGAAGGCGCGAGAAGCTTAACGATAACTTCCAAGCACTTAGGGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCGAAGGAGACACTAAGGTCGTTGATGGGAGAAATAGAGAAACTAAGCAAAAGAAACCAAGAGTTGTTGATGTCACAAACGTCGGCTGCTTCGAATAAAGAAACTATGAAATTCTCGTCGAATGAGAGAATTAACGTGCGAGTTTTGCATGTAGCGGAATCAAGTTCATCGGAAGATGAACCAATGACAGTGGAGTTACAAGTGAATGTGCTAGGACAAGTTTCTCAAGCTGATATGTTGATTAGGTTATTAGAATTCTTAAATCAAGTTCATCATGTCAATTTGATTTCAATGGATGCAACAAATACAAATACAAATACTTCACAAGACAATAATTATCTTCATCAAATAACATTCAGATTAAGGATTACTCAGGTGAGTGAATGGGACGAGGAGGCCTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTACCAAGTGGACCAAAATCTATGA 1698 0.3804 MEGLFSLPVAVRTEFIHSLMQSLGGCSYICVWTYDTILPKYIYIFNISICIHLPTLLLLYIRLLILLIQRFDFIFLFLWTSRLSFLDGIYNVISSHQPSSSLGSLAQQLFDQYTILSFDINDDRIPGLAFRNQRPYIELQQLELLTLSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSQTDIQTALRNLFPEDFSRQIQQIDQNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFINPPGTSPSSHNFPDHILGGVNIPPMRPVSNTLPFQLQQQPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQNHAARPEASAFGRYRNDKSPIIIGSNFRRQSLMKRSFAFFRNLNLMRLKERNQATRPSSNQLHHMISERRRREKLNDNFQALRALLPQGTKKDKASILITAKETLRSLMGEIEKLSKRNQELLMSQTSAASNKETMKFSSNERINVRVLHVAESSSSEDEPMTVELQVNVLGQVSQADMLIRLLEFLNQVHHVNLISMDATNTNTNTSQDNNYLHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDQNL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi443g00002 565 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 149 555 IPR044658 -
Vivi443g00002 565 CDD bHLH_AtbHLH_like 375 427 IPR045239 -
Vivi443g00002 565 SMART finulus 376 425 IPR011598 GO:0046983
Vivi443g00002 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 437 IPR036638 GO:0046983
Vivi443g00002 565 Coils Coil 409 436 - -
Vivi443g00002 565 Pfam Helix-loop-helix DNA-binding domain 374 419 IPR011598 GO:0046983
Vivi443g00002 565 Gene3D - 369 444 IPR036638 GO:0046983
Vivi443g00002 565 MobiDBLite consensus disorder prediction 206 249 - -
Vivi443g00002 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 419 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi443g00002 63 556 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.131 1.36e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi443g00002 HLH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi443g00002 - - vvo:131631482 1001.89