Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi441g00002 ATGGAAAATCAATTCTTTTCAAACAATAATCTTCATTTTGAACAATCACATCCAACATGGCAATCACTTTCACTTTCATCAGACCAACAACAACAGAATAATCAAGATTGTTTATATACACCAACAGATCAATGTGTTCATCAATTCGATTCCGCACTTAGCTCAATGGTATCTTCACCAGCAGCTTCCAACTCCAACATGTCAAATGAAAACTTTGTCATAAGAGAATTGATTGGAAAATTGGGAAACATTGGTAATTGTTCTGATGAGATCTCACACACTTTGGTTGCTGCAAGCTCTTACATCAATAGCAATAACAATACTTCATGTTACAACACCCCTTTAAACTCTCCTCCTAAATTGAGCATTCAAAACATGAGTTTGAATTCGACGGTTGCCGAATTATCAACTGATCCTGGTTTTGCTGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGAACATCAACACAATTGAGTCAAAGTCAAAGATCTACTCCATTGATGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAATTGGTACTCAAGAGAACATTCATGATCCAATTGAAGTTAACAATTCACAAGAAGAATCAACGATCTCCGAGAATGGTAACAAACCTTCTCCTTATGTGAATTCAAGGAAAAGAAAAGCATCATCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAACCCTCCAATGGCTTGTGAAGTTGGTGAAGATTCAAATTCAAAGCGCATGAAAACTAGTGAAGGTGAAAAAGTTGAAAATGGTAAAGTAAAAGCAGAGGAAGAGTCAAAAGGAGGTGCAAATAGTAATGATGGAGGTGATGAAAAACAGAATAAGAGTAACTCAAAACCTCCTGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGCCATAGTCTTGCAGAAAGAGTAAGAAGGGAGAAAATAAGCGAAAGAATGAAACTTCTGCAAGATCTCGTACCAGGTTGCAATAAGGTAACTGGAAAAGCACTTATGCTTGATGAAATAATAAACTATGTTCAATCATTGCAGCGACAAGTTGAGTTTCTATCTATGAAATTGGCTTCTGTCAACACAAGGGTGGATTTTAGTATTGAAAGCCTAATATCAAAAGATATGTTTCAATCAAATAATTCTTTGGCACACCCAATATTCTCTCAAGATTCCTCAGCACCATCCTTTTATGGGCAACAACACCAGCAAAATCCAGCAATCCACAATAACATTTCTAATGGAACTGTGCCCCACAACTCATTGGACCCATTAGAAAATGCTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTCAATGGATTCCATGAAGCTGCCTCTCAGTATCCATTAGCATTCTCTGAAGATGACCTCCACACAATTGTTCAAATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGCACAAATCAACTACCCCTATGA 1551 0.3694 MENQFFSNNNLHFEQSHPTWQSLSLSSDQQQQNNQDCLYTPTDQCVHQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISHTLVAASSYINSNNNTSCYNTPLNSPPKLSIQNMSLNSTVAELSTDPGFAERAAKFSCFGSRSFNGRTSTQLSQSQRSTPLMENGKLSRVSSSPSLKELGSQSQIGTQENIHDPIEVNNSQEESTISENGNKPSPYVNSRKRKASSKGKTKENSTSSNPPMACEVGEDSNSKRMKTSEGEKVENGKVKAEEESKGGANSNDGGDEKQNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIESLISKDMFQSNNSLAHPIFSQDSSAPSFYGQQHQQNPAIHNNISNGTVPHNSLDPLENALCQNLGMHLSSLNGFHEAASQYPLAFSEDDLHTIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi441g00002 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
Vivi441g00002 516 MobiDBLite consensus disorder prediction 242 256 - -
Vivi441g00002 516 SMART finulus 328 378 IPR011598 GO:0046983
Vivi441g00002 516 MobiDBLite consensus disorder prediction 158 312 - -
Vivi441g00002 516 Pfam Helix-loop-helix DNA-binding domain 326 373 IPR011598 GO:0046983
Vivi441g00002 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 391 IPR036638 GO:0046983
Vivi441g00002 516 CDD bHLH_AtBPE_like 312 397 - -
Vivi441g00002 516 MobiDBLite consensus disorder prediction 260 291 - -
Vivi441g00002 516 Coils Coil 369 389 - -
Vivi441g00002 516 Gene3D - 319 393 IPR036638 GO:0046983
Vivi441g00002 516 MobiDBLite consensus disorder prediction 298 312 - -
Vivi441g00002 516 FunFam Basic helix-loop-helix transcription factor 319 391 - -
Vivi441g00002 516 MobiDBLite consensus disorder prediction 158 233 - -
Vivi441g00002 516 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 214 437 IPR024097 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi441g00002 1 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.821 4.25e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi441g00002 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi441g00002 - - tpra:123889043 818.535