Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi440g00001 ATGGCGCTGTTCCGAAGATTATTTTACCGGAAGCCGCCGGATCGTCTTCTCGAGATCTCTGAGAGAGTTTATGTTTTTGATTGCTGCTTCTCTACGGGCGTCTTGGAAGAAGATGAGTACAAATTGTATATGGGGGGAATTGTAGCTCAGCTACAAGATTACTTTCCAGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGCCAAATTTCTGACATATTATCTTTATGTGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGCTGTCCACTTCTTCCTCTAGAGATGGTTCATCATTTCCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGAGGGGGTTGGCCTGTGCTGGCATTTATGTTAGCCGGTCTTTTATTGTACCGAAAACAATATAGTGGGGAGCTGAAGACTCTTGAAATGGTCTACAAGCAAGCACCCAGAGAACTTCTCCAGCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTTAAGATATCTTCATTATATTTCCAGGAGAGATTTGGGTTCTGAGTGGCCTCCTTCAGACACACCTTTATATTTAGATTGTGTAATTCTAAGAGATCTTCCATTATTTGATGGTGGGAAAGGTTGCAGGCCTGTTGTAAATGTTTATGGTCCGGACCCTTCAAATCCTGCCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAAGTCCAAAATCATGTTCGCCACTACCCGCAGGCAGAGTGTATGCTCGTGAAAATTGATATTCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAATGCGTACATTTAAACGAAGATTTCCTTAGTGAGGAGATGATGTTTAGAGTGATGTTTCATACTGCATTTATACGGTCAAATATTTTGGTGCTGAGCCGTGATGAAATCGATATATTGTGGGATACAAAGGATCAGTTCCCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACAGTCAATGTGAGTGAAGAAGATGAAAATGAGACAGAAAGCGGTTCCCCTGAGGAATTCTACGAAGTGGAAGAGATTTTCAGCAATGTAGTTGATATACAGGATTCTCCAAAGTTTCGTCAAAATGCAGTAGATGTCTGGAAAGAGTATTCAGATCCTCCTACCTTTCAGGATTCTACGCAAGATGACGGGATTAACCAACAGGTTGAATGGACAGATTCTGTTATTAATGAGGTGAAAGACATCACGGTTGATGATGTGAAATACAAGCTTGATGAGCGTGTAGATTCAGATACTCATGCAGTGAAAGATATTGCTGTGGATGGTGGAGAAAATAAGTTAACTTCCACTGCTGTTACTTTTGATATGACGGAAACTCCGGAGAGACAGGAAGTCACTTTGAATGTGCATGATGAGTTAGCAGTTACGCGAAACAATTATGATGAAGACAATGATGCAACACTTAAAGAATTAGAGCCTGAGGAAGGGCAGCAGACGCATGATCTTGCCGGATCAATATCTGGTGAAAAGAAACAACTTTCTTCAGACTCAAAGCCAGTGGGAGACGTAGTTGCAGAAAAGCAAAAGGCTAAACAGAAAGAACCACGGGGATTTCAGGAAAAACAGGCAAAAGAAAATGCAACAACTAGGTGGATACCTTCTAACAAAGGTTCTTATCAAGATTCAATGCATGTTTCATATCCACCGATAAGGCATAATAGTTTACCACCTGTTTTGTCAAATGCTACCTCTGCGAAGGAGAAAATGACTAATGCCAAAGGAAGACGTATTTCTAGTTCTCGTTCGACAAATGATCTGAAAAGTTGTAATGGGGACAATTCAAAATCTCTAGAAAGCATATGGGAAACTGATTCAAACGCCCAGCTGTCACCATTGACACCAATTACAGAGTCATCTCATCAGTCAGCTACTCAAGCACCACAGTTGAGCTCTGATCAAGTGCTACAACCTCATCTCCCCCCTTTCCCTCCACCCCCACCTCCACCCACATCACCATCTTCTTCCTTGGATGGTAAAGTGTCTACGATACCACAACCGCCGCCTCAACCGCCTCCTCAACCACCAGCACCACCTCCACCTTTTTTGTCAGGTTTTGGCAAGAAAAATGAAGAGATGGACTTACAAGCTGCAACTCATCCTCCTCCACCCCCACCTCCGCCTTCATTTTCTGCGCAAAATAGAGGGAGCTCATTACCTCTTTCTACTCACAGGAAGCCCTATTATTCATCAATTGGCATGGTTGGAGAAAATGGTGGTGCTTTACCTCCTTCAATAGGAAGTGTTTTTGCATCAAAAGTTTATAAATTAGTTGATGGAGTCTCTCTTCCCATTCCTCCTCCCCCACCACCTCCACCCCCTTCTTCTCTCCCCCCAAATTATGGAGTTACATCCATTCCTCCTCCACCACCTCCCTCACCTTCTTTGTCTTATATGGATAGAGCTCCACCACTCCTTCCTCCTATAACACCAACATCACTTAATGCTCCACTACCACCACCTTTAAGTAAATCTCAACCTCCACCTCCACCACCATTGCCGCTTACTCCTTCTTTTTGTAAAGCTCCATCAACCCCACTTGCTATTAGTATAGCTCCACTGCCTCCACCTCTACCTCATTTGAGTGGAGCACGACCTCCACCTCTTCCTTCAACAAGTAAAACACAACCTCCGCCACCACCACCTCTTCCTTCATCAAGTGCAGAACATCCACCACCACCACCACCGCCTCCTTCAATGTCTAACATCCCACCACCCCCACCCCCACCCATACCACCACCACCACCACTTTCTCTATCTTGTAGAGCATCTCTACCACCACCTCTTCCTTCAATTTCTAAGGGCCCCCTACCCCCACCCCCTCCTCCACCATTCTTTGGAACTCCACCATCATCATTTCATCCTAGATCAAGTAGAGCACCTTCACCACCACCTCCTTTGTCCAAGGATCCACCATTCTATAGAGCTCCACCCCCACCCCCACCCCCACCCCCACCATTCTATGGAACTCCACCACCACCACCACCACCACCACCTCTTTTTTCATCAAGTGGAGTACCTCCAACACCATCTCCTTCATTGCCTAAGGCCCCACCACCCCCACCACCACCACCATATCTTCCTACATTAAGTAGTGAAATACCTCCAACACCACCAACTCTTGCAATGTCTAAGGCCCCACCTTCAGCACTCAATAGAGCTCCACCACCACCACCACCACCATATCTTCCTGCATCTAATGGAGCACCTCAACCACCACCACCACCTCCTTCAATGTCTAAGACCCCACCACCACCACCTCCACCATTCTATGGGGCTCCACCAACCCCACCACCACCACCATATCTTCCTGCATCTAGTGGAGCACCACCGCCACCACCACCACCATATCTTCCTACAACTAGTGGAGCACCACCTCCTCCACCTCCCCCTTTTTATGGAGCAACACCACCACCACCACCACCACCTCATTCATTGTCTATGGCCCCACCACCCCCACCTCCACCATTCTATGGAGCTCCACCACCGCCACCACCTCCAATGCATGCAACACAGGCACCACCTCCTCCACCACCTCCGGGGGGTCGAGGCCCACCTCCTCCTCCACCTCTAGGTTTTCGAGGCCCACCTCCTCCGCCACCTCCAGGTTTTCGAGGCCCACCTCCTCCGCCACTTCCAGGTGGCCACGGCCCACCTCCTCCTCCACCTCCAGGTGGTCGAGGCCCTGCTCCACCACCGCCTCCTGGAGGTCATGCACCTGGTGCTCCCGCACCTCCTAGACTTCCAGGTGGTGCACCCCCACCACCCGGGGCTGATCCAAGAGGTAGAGGGCGTGGACTTGCTCGTCCTACTGGTGCAGCGGCACCTCGGCGATCCTCCTTAAAGCCTCTTCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAAACTCAAATTGGACAAGAGTTTGACGTTTCAGAGTTAGAGAAGCTTTTTGCTGTAAATGTTCCAAAACCTGCTGCTGCTGGTGGTAAATCTGGAGGGCTAGGCAAATCCGCAGGATCCAAACCTGAGAAAATTACCTTGGTTGATTTAAGGAGAGCCTATAATACTGAAATAATGCTTACAAAGGTTAAGATGCCTCTACCGGATATGATGGCTGCAGTTCTGGCTTTGGATGACACAGTATTAGATGTTGATCAGGTGGAAAATCTTATTAAATTTTGCCCTACCAAAGAGGAAATGGATCTTTTGAAGGCATATACTGGCAACAAGGAGAATTTGGGAAAGTGCGAACAGTTCTTTATGGAGCTGATGAAAGTGCCACGAGTTGAGTCGAAATTAAGAGTATTCTGTTTCAAGATTCAATTTCAGTGTCAGATTACAGAGTTTAATAAGAGTTTAAACTTAGTGAACTCTGCATGTGAAGAGGTCCGAAATTCAGTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATGCATTGAATCAAGGAACAGCAAGAGGAGCTGCTGTTGGATTTAAGTTAGATAGCCTTTTAAAGCTCACCGATACTCGTGCTTCTAACAGCAAAATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGTCTCCTACACTCCTTGATTTTCACCTCGACCTAGTTAGCGTAGATACTGCCTCTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAGGCAATTACCAAGGGACTAGAAAAAGTAAACCAGGAGCTTGCTGCTTCTGAAAGTGATGGCCCAGTATCTGAAGTTTTCCGTAAGACATTGAAAGATTTCGTTAATGAAGCCAAGTCTCAGGTGGATTCTGTAACACGCCTATATTCTGATGTGAAATGCAGACGCACTTGCACAGTATTTCAATGA 4968 0.4616 MALFRRLFYRKPPDRLLEISERVYVFDCCFSTGVLEEDEYKLYMGGIVAQLQDYFPDASFMVFNFREGDRRSQISDILSLCDMTVMEYPRQYEGCPLLPLEMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGELKTLEMVYKQAPRELLQLLSPLNPQPSQLRYLHYISRRDLGSEWPPSDTPLYLDCVILRDLPLFDGGKGCRPVVNVYGPDPSNPANRSSKLLFSTSKVQNHVRHYPQAECMLVKIDIRCRVQGDVVLECVHLNEDFLSEEMMFRVMFHTAFIRSNILVLSRDEIDILWDTKDQFPKDFKSEVLFLDADAVIPNLTTVNVSEEDENETESGSPEEFYEVEEIFSNVVDIQDSPKFRQNAVDVWKEYSDPPTFQDSTQDDGINQQVEWTDSVINEVKDITVDDVKYKLDERVDSDTHAVKDIAVDGGENKLTSTAVTFDMTETPERQEVTLNVHDELAVTRNNYDEDNDATLKELEPEEGQQTHDLAGSISGEKKQLSSDSKPVGDVVAEKQKAKQKEPRGFQEKQAKENATTRWIPSNKGSYQDSMHVSYPPIRHNSLPPVLSNATSAKEKMTNAKGRRISSSRSTNDLKSCNGDNSKSLESIWETDSNAQLSPLTPITESSHQSATQAPQLSSDQVLQPHLPPFPPPPPPPTSPSSSLDGKVSTIPQPPPQPPPQPPAPPPPFLSGFGKKNEEMDLQAATHPPPPPPPPSFSAQNRGSSLPLSTHRKPYYSSIGMVGENGGALPPSIGSVFASKVYKLVDGVSLPIPPPPPPPPPSSLPPNYGVTSIPPPPPPSPSLSYMDRAPPLLPPITPTSLNAPLPPPLSKSQPPPPPPLPLTPSFCKAPSTPLAISIAPLPPPLPHLSGARPPPLPSTSKTQPPPPPPLPSSSAEHPPPPPPPPSMSNIPPPPPPPIPPPPPLSLSCRASLPPPLPSISKGPLPPPPPPPFFGTPPSSFHPRSSRAPSPPPPLSKDPPFYRAPPPPPPPPPPFYGTPPPPPPPPPLFSSSGVPPTPSPSLPKAPPPPPPPPYLPTLSSEIPPTPPTLAMSKAPPSALNRAPPPPPPPYLPASNGAPQPPPPPPSMSKTPPPPPPPFYGAPPTPPPPPYLPASSGAPPPPPPPYLPTTSGAPPPPPPPFYGATPPPPPPPHSLSMAPPPPPPPFYGAPPPPPPPMHATQAPPPPPPPGGRGPPPPPPLGFRGPPPPPPPGFRGPPPPPLPGGHGPPPPPPPGGRGPAPPPPPGGHAPGAPAPPRLPGGAPPPPGADPRGRGRGLARPTGAAAPRRSSLKPLHWSKVTRALQGSLWEELQRHGETQIGQEFDVSELEKLFAVNVPKPAAAGGKSGGLGKSAGSKPEKITLVDLRRAYNTEIMLTKVKMPLPDMMAAVLALDDTVLDVDQVENLIKFCPTKEEMDLLKAYTGNKENLGKCEQFFMELMKVPRVESKLRVFCFKIQFQCQITEFNKSLNLVNSACEEVRNSVKLKEIMKKILYLGNALNQGTARGAAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAEKSPTLLDFHLDLVSVDTASKIQLKSLAEEMQAITKGLEKVNQELAASESDGPVSEVFRKTLKDFVNEAKSQVDSVTRLYSDVKCRRTCTVFQ 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi440g00001 1655 Gene3D Formin, FH2 domain 1304 1654 IPR042201 -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 793 1316 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 558 576 - -
Vivi440g00001 1655 SMART PTEN_C2_2 198 338 IPR014020 -
Vivi440g00001 1655 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 795 831 - -
Vivi440g00001 1655 Coils Coil 1586 1606 - -
Vivi440g00001 1655 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 506 779 - -
Vivi440g00001 1655 PRINTS Proline rich extensin signature 734 750 - -
Vivi440g00001 1655 PRINTS Proline rich extensin signature 800 825 - -
Vivi440g00001 1655 PRINTS Proline rich extensin signature 702 714 - -
Vivi440g00001 1655 PRINTS Proline rich extensin signature 674 690 - -
Vivi440g00001 1655 Gene3D - 204 336 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 697 716 - -
Vivi440g00001 1655 PANTHER FORMIN-J 1 760 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 536 557 - -
Vivi440g00001 1655 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vivi440g00001 1655 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 882 1076 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 1083 1293 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 514 528 - -
Vivi440g00001 1655 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1252 1646 - -
Vivi440g00001 1655 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1304 1655 IPR015425 -
Vivi440g00001 1655 Pfam Formin Homology 2 Domain 1310 1646 IPR015425 -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 609 669 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 671 687 - -
Vivi440g00001 1655 MobiDBLite consensus disorder prediction 837 872 - -
Vivi440g00001 1655 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Vivi440g00001 1655 SMART it6_source 468 1655 IPR015425 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi440g00001 1 622 FH2 protein (formin) Gene Family AT5G07740 58.333 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi440g00001 - - mtr:25488802 1204.5