Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi43g00011 ATGAGAATGGGAAAGTGTTGGTTTGCTGGTGTGTTGATTGTTTTGGGTTATGTATGCTTGTTGGGTAATATTTTTAGGGTAGAAGGGTACCCTATTGAAGATTTGGTTGAGAGGTTACCAGGGCAACCCAAGGTTAAATTTAGTCAATATGCTGGCTATGTTGATATTGATGTAAAGCATGGGAGGAGTCTCTTCTACTATTTTGTTGAGGCTGATCATCATCCTCACAAAAAACCTCTCACCCTTTGGCTCAATGGAGGTCCGGGATGTTCTTCCATTGGAGGAGGTGCTTTTACTGAATTAGGACCGTTTTATCCTAAGGGTGATGGACGTGGTTTACGTAGGAATTCAAAGTCTTGGAATAAAGTTTCAAATCTTCTGTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACATCTGATTATATCAAAGATGATGCCTCCACAGCAAATGATATGGTTTTATTCTTGCTGAAATGGTACGAGAAATTCCCTTCTTACAAATCAAGAAAGTTGTTTTTGACCGGAGAAAGCTATGCAGGACATTACATACCACAGTTAGCTAATGCTATTCTTGATTATAATATTCATCACCCGACTGGTTTCAAATTCAATATAAAAGGACTCGCGATTGGAAACCCGCTTTTGAAATGGAATAAAGATAGACGTACAACATATGAATTTTTCTGGTCACACGGAATGATTTCAGATGAACTTGGAGTTGCAATCATGGATGATTGCGATTTTGATGATTATTATTATGGAGATCATCAAAATTTATCCGAATCATGCAACAATGCCTTAACCGATGCTAATAAAATCGTGGGCAAGTATATAAACGTATATGATGTGATTCTTGATGTTTGTTATCCAGCCATAGCTGAACAAGAAATGAGATTGAAAAAGATGTTACATAATATAAGTTTAGGCGTAGATGTCTGTATTGAATCCGAAACCAAGTTTTACCTTAACCTTCCAGAGGTTCAGAAGGCTCTTCATGCTAATCGTACCAATTTGTCGTATCCATGGTCCGATTGTAGTAATCTTTTAAATTATAGTAAAACAGATCCTGATATCAATATGCTTCCAATTCTCAAACGGATAATTCAAAACCGTATTCCAGTATGGATTTTCAGTGGAGACCAAGATTCAGTTATACCATTAATCGGATCTCGAACACTCGTTCGTGAATTAGCTCATGACCTAAAATTCAAGATTACTGATCCATATAGAGTTTGGTTTCACAAAGGACAGGTTGGAGGTTGGGTAACTGAGTATGGAAAATTGTTAACTTTTGCTACTGTAAGAGGAGCTGGTCATATGGTACCATATGCACAACCATCTAGAGCATTGGATCTATTCAAATCTTTTTTGCATGGCATGAGATTGCCAAACACTACTCGACCTTCAATTAGTGATGAAGAACTTGATTTTTATTAA 1452 0.3726 MRMGKCWFAGVLIVLGYVCLLGNIFRVEGYPIEDLVERLPGQPKVKFSQYAGYVDIDVKHGRSLFYYFVEADHHPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNSKSWNKVSNLLFVESPAGVGWSYSNTTSDYIKDDASTANDMVLFLLKWYEKFPSYKSRKLFLTGESYAGHYIPQLANAILDYNIHHPTGFKFNIKGLAIGNPLLKWNKDRRTTYEFFWSHGMISDELGVAIMDDCDFDDYYYGDHQNLSESCNNALTDANKIVGKYINVYDVILDVCYPAIAEQEMRLKKMLHNISLGVDVCIESETKFYLNLPEVQKALHANRTNLSYPWSDCSNLLNYSKTDPDINMLPILKRIIQNRIPVWIFSGDQDSVIPLIGSRTLVRELAHDLKFKITDPYRVWFHKGQVGGWVTEYGKLLTFATVRGAGHMVPYAQPSRALDLFKSFLHGMRLPNTTRPSISDEELDFY 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi43g00011 483 Gene3D - 365 464 - -
Vivi43g00011 483 Gene3D alpha/beta hydrolase 32 294 IPR029058 -
Vivi43g00011 483 SUPERFAMILY alpha/beta-Hydrolases 37 467 IPR029058 -
Vivi43g00011 483 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Vivi43g00011 483 FunFam Carboxypeptidase 365 464 - -
Vivi43g00011 483 FunFam Carboxypeptidase 30 295 - -
Vivi43g00011 483 Gene3D - 318 354 - -
Vivi43g00011 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vivi43g00011 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vivi43g00011 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 434 447 IPR001563 GO:0004185|GO:0006508
Vivi43g00011 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vivi43g00011 483 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 451 IPR001563 GO:0004185|GO:0006508
Vivi43g00011 483 ProSitePatterns Serine carboxypeptidases, histidine active site. 434 451 IPR033124 GO:0004185
Vivi43g00011 483 Pfam Serine carboxypeptidase 41 464 IPR001563 GO:0004185|GO:0006508
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi43g00011 323 467 Calmodulin-binding Proteins AT2G22960 26.207 8.05e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi43g00011 K16297 - gmx:100803335 771.541