Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi43g00005 ATGTCAACCACAGCTCTTCCACCATCCACCACCGTCATCACCACCACCACCGCTGGTGTAGGTCTCGGCTACGGCATCGCGATTGCCGTAAGCATCCTCGTCCTCATCTCAACAATCATGCTCGCCTCCTACATTTGCGTCCGCTTAAAATCCCAAGGACGTCGCAACTCCTTCCATCTTGACACTCGCCGCGAAAATGTATCTATAAATCAAAATAATATAAACGGCTCGGGCATTCAGACTGAATTACCCGGGCCGTTTATCTTGGGCTTAGAAAAGCCCGAGATAGAATCCTACCCGAAGATGTTACTTGGAGAGAGTATGCGACTGCCGAAGCCGAATGAAGGCCCGTGTTCGATCTGTTTGAATGATTATCTTCCGAAAGAAATGATCCGGTGTGTGCCGGATTGTCAGCATTGTTTTCATGCGGAGTGTGTTGATGAGTGGCTTCGGATGAGTGCTACGTGTCCGCTGTGCCGGAACTCGCCTGCTCCGTCGCCCGTGGCTACGCCTTTGTCGGAGCTTGTTCCTCTGGCTTTTCATGCTAGGTGA 552 0.5145 MSTTALPPSTTVITTTTAGVGLGYGIAIAVSILVLISTIMLASYICVRLKSQGRRNSFHLDTRRENVSINQNNINGSGIQTELPGPFILGLEKPEIESYPKMLLGESMRLPKPNEGPCSICLNDYLPKEMIRCVPDCQHCFHAECVDEWLRMSATCPLCRNSPAPSPVATPLSELVPLAFHAR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi43g00005 183 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vivi43g00005 183 CDD RING-H2_EL5-like 118 160 - -
Vivi43g00005 183 PANTHER RING-H2 FINGER PROTEIN ATL67 7 181 IPR044289 GO:0016567|GO:0016740
Vivi43g00005 183 SMART ring_2 118 159 IPR001841 -
Vivi43g00005 183 SUPERFAMILY RING/U-box 117 165 - -
Vivi43g00005 183 Pfam Ring finger domain 118 160 IPR001841 -
Vivi43g00005 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi43g00005 13 183 C3H Transcription Factor Family AT5G07040 60.345 3.04e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi43g00005 - - lja:Lj3g3v0787250.1 248.054