LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi438g00015	ATGGAATTCAAGGCTACTGAACTTAGATTGGGGTTACCAGGAATAACAGAGGAAGAGGAAAAGAAAATCAAGAACAACAAAAGACAATTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCCAAGGTTACAAATGATGAGCAGATTGTGGAGAGTTCTTCTGCAGCCCCTCCTGCAAAGGCAAAGATAGTTGGGTGGCCACCAATTAGATCTTACAGGAAAAACAGTTTGCAAGAGGCTGATGCTGGTGGGATCTTTGTGAAAGTGAGCATGGATGGTGCCCCTTACCTTAGAAAGATTGACTTAAAGGTCTATGGAGGGTACCCAGAATTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGGTGAGTATTCTGAAAGAGAAGGTTATAAGGGATCTGAATTTGCACCAACTTATGAAGACAAGGATGGTGATTGGATGTTAGTCGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGGGCAGAAGCTAAAGGTTTGGGTTGTGGTGTATGA	546	0.4176	MEFKATELRLGLPGITEEEEKKIKNNKRQLPQTSEESVSISKVTNDEQIVESSSAAPPAKAKIVGWPPIRSYRKNSLQEADAGGIFVKVSMDGAPYLRKIDLKVYGGYPELLKALETMFKLTIGEYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGAEAKGLGCGV	181

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi438g00015	181	FunFam	Auxin-responsive protein	79	181	-	-
	Vivi438g00015	181	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	3	175	IPR003311	GO:0005634\|GO:0006355
	Vivi438g00015	181	MobiDBLite	consensus disorder prediction	19	54	-	-
	Vivi438g00015	181	MobiDBLite	consensus disorder prediction	30	52	-	-
	Vivi438g00015	181	SUPERFAMILY	CAD & PB1 domains	75	170	-	-
	Vivi438g00015	181	Gene3D	-	78	181	-	-
	Vivi438g00015	181	ProSiteProfiles	PB1 domain profile.	84	171	IPR000270	GO:0005515
	Vivi438g00015	181	Pfam	AUX/IAA family	26	178	IPR033389	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi438g00015	87	177	B3 DNA Binding Superfamily	AT2G46530	38.462	1.67e-11	60.1

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Vivi438g00015		AUX_IAA	5.3e-52	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi438g00015	K14484		-	gmx:100800212	287.73

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