Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi438g00006 ATGGTTGGATTGGAACTCATACCGATAGGTACAATTTTGGCTGTTCTAACCAGCCAGGTTGTGAGAACAGCTAGTGCTGCAAAAGATGTTCTTATCGACAAAGAAAGTTTTAATGTCCTTTCGAAACACCTGCTTGATATTGCACCAGTTCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCACAAGCTGCAAGGGTTGCTTTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAATTTGGTTGAGAAGTACAGGAGCAGCGGCCGTTTTTACTTACTTATGAAGTGTCGTCACATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATAGGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTTCTATCAAGAATTTCTGATCAAGTCAACAGACTACAGAGTGAGATGCAAAGGGCTGAGTTTGAGGCTTCGCAATCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAGGCTTTTGCGAACAATATGCTCGAAGAGATAGCGAGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCAAACCGGAAAGAAAGAGCCGAAGTTATATTTTTGGAGCAGATCATTTTGCTACTCTCTCAAGCTGATGCAGCAAGTGATTACGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAGCGATATGGTTCAAGGGAAAAATATATTCCACCACTCAATTCTTTCCTTTGTTCGATAACCGGAGCTGTTATGGTAGATCCTGTCAGTCTTTGCACCGGGACTACATGCGAGAGATCTGCCATCGAAGTTTGGTTTGATGGTGGCAATATGACTGACCCGAAAACAAAAGAGGTTCTTGAAGATATAACCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTCTGGCTTATTATTGCATGAGTCCTTGAGTCAGATGCAGACTCTCCTAAGAGAGAATTCAATTAATAAAGATTGGATTTCTATAGGAGGGCTTACTGATATTACTATCTCCATCCTTGGGAATTCTGATTCTATAGATGTCAAGATGAATATCTTGATTACTTTGAAGGATGCTGTTGAAGGGCATGCAAGAAACAAGGAAAAAGTGGTTGGATCTCAAGGATGGTGTCACATTATTTCCTGCTTACACAATGACTCTAGAGTAATAAAGGAAGCAATTGATTTACTCTATGAGTTGCTTCAAGACCGTTCTGGTTGGAATAGATGTTTCTGCAAAAAACTTTCTGAGCATCCCAGCATAGTTCATTACCTTGTTACCATTCTAAGGGGACCTGTCAGCGATTCAACTGGGATTGCAGAAAAGATTTTGACGGAGCTTTTTGAAATAGATGAGGAAAACATTTCATGTGCTGCTAAGTTTGGCTGGTACAAAGCACTTGTTGATCGCATGATTGAAGGATCGGAGTCTTCAAGAATATCGATGGCTAAAGCTATAATCAATTTCAATTTGGAAGAATCAAATTTAAAACTCCTTGGTGAGAAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCCGGAAGCATTGAATCGAAAGAATTGTCACTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAACAAGGGAATTATTGCTGCATATGGAGGTGTCCCCATTCTTCTAGATTTAATGTTCTCCCTTCGGACACGGGCGTTCATTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTTCTGATGGAATTGGTTTCTTTATAGACGGAGAAGGGAAACAACTTGAATTAGATAACATTATCACCAATTTGCTAGCTCTGCAACAGCTTCCTAATTCAGCTCAGTACTTCCGTAAGCCTGCATTGCGTGCTCTTCTTGGCATTTGCAAGTTTGAGACAGGTTTAGTTAAGAAGGCAGTTTTGGCAGCGCACGGTGTATCACTAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATCAGGGAAACTGCCATTAGTCTTCTCTTTCTTTTCTCGCAACATGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCTAGAAGACTTGAAGCTTTAGTCGGCTTTCTTGAGAATGACGAAAATAATGATGTACAAGTAGCTGCTACTGGTTTACTAGCTAACCTTCCTAAATCCGAACGAAAACTCACCATGCAATTAATTGACTTAGGTGGCCTTGATGCAATTATAAACATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTTAGGTTCACAGATCCCACAGATATCAATTCACAGCGCGATTTGGTTAGACGGGGAATATATCCTTTGTTAGTAAAATTTCTCAATACTGGTTCAGTGACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCCATGAGCACTCCAAAGCTAACAGTTGTTTCAAAATCAACGTTTTGCAGGTGTCTTCGACCATCACGAGCTCCTTTATGCTCGGCACACGGAAGTGTTTGCAATGTGAATTCCACATTTTGTCTTTTGGAAGCAAATGCTCTGCCTGGCTTGGTTAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTACGAAGCTATACAGACACTTTCCACATTGGTTATAGAAGATTTTCCTCAAAGAGGAGCTTGTGTTTTGCATGAGTCGAATGCAATGAGACCGCTATTGAAAATTTTAAACTGGGGAAGTGATTCTCTTAAGGCAGAAGTTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGATCAACGGCTAGATTACGTCTATTCCATCTTACTGGGATGAATGTATATGGGGACGGCCACCTGAGGAGAAAAGCTGCCAGGGTTCTGTCATTGCTGGAACGCTCTTCGAGATCGTCATCACATTCAGTCAGTGGAGTTGTGTTGAGTGAGAATCTACGCCTATGA 3069 0.407 MVGLELIPIGTILAVLTSQVVRTASAAKDVLIDKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKQASNLVEKYRSSGRFYLLMKCRHIVKEVEQVIRDIGRSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANNMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAASDYEEVKKQYFQRVQVIERYGSREKYIPPLNSFLCSITGAVMVDPVSLCTGTTCERSAIEVWFDGGNMTDPKTKEVLEDITLRSNIRLRESIVEWRELNYCFRIKSIRENLLSNSGLLLHESLSQMQTLLRENSINKDWISIGGLTDITISILGNSDSIDVKMNILITLKDAVEGHARNKEKVVGSQGWCHIISCLHNDSRVIKEAIDLLYELLQDRSGWNRCFCKKLSEHPSIVHYLVTILRGPVSDSTGIAEKILTELFEIDEENISCAAKFGWYKALVDRMIEGSESSRISMAKAIINFNLEESNLKLLGEKGVIPPLLEMLSGSIESKELSLSALVKLAGVHANKGIIAAYGGVPILLDLMFSLRTRAFISIKCFEILEKLSSSSDGIGFFIDGEGKQLELDNIITNLLALQQLPNSAQYFRKPALRALLGICKFETGLVKKAVLAAHGVSLILPLLDDSDSEIRETAISLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAATGLLANLPKSERKLTMQLIDLGGLDAIINILKNGTMEAKENALSALFRFTDPTDINSQRDLVRRGIYPLLVKFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTFCRCLRPSRAPLCSAHGSVCNVNSTFCLLEANALPGLVKLLQEEVHATAYEAIQTLSTLVIEDFPQRGACVLHESNAMRPLLKILNWGSDSLKAEVLGLLEKVFVSKEMVEYYGSTARLRLFHLTGMNVYGDGHLRRKAARVLSLLERSSRSSSHSVSGVVLSENLRL 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi438g00006 1022 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vivi438g00006 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 335 IPR013083 -
Vivi438g00006 1022 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Vivi438g00006 1022 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vivi438g00006 1022 SUPERFAMILY ARM repeat 647 1000 IPR016024 -
Vivi438g00006 1022 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vivi438g00006 1022 Coils Coil 127 154 - -
Vivi438g00006 1022 Gene3D - 336 538 IPR011989 -
Vivi438g00006 1022 SMART arm_5 673 713 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 537 576 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 715 757 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 801 842 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 875 915 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 758 799 IPR000225 GO:0005515
Vivi438g00006 1022 SMART arm_5 408 447 IPR000225 GO:0005515
Vivi438g00006 1022 SUPERFAMILY RING/U-box 247 331 - -
Vivi438g00006 1022 Coils Coil 62 89 - -
Vivi438g00006 1022 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vivi438g00006 1022 SUPERFAMILY ARM repeat 371 755 IPR016024 -
Vivi438g00006 1022 CDD MLKL_NTD 10 142 - -
Vivi438g00006 1022 Gene3D - 9 123 IPR036537 GO:0007166
Vivi438g00006 1022 Gene3D - 542 760 IPR011989 -
Vivi438g00006 1022 Gene3D - 761 1015 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi438g00006 69 959 U-box Gene Family AT1G68940 22.814 2.83e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi438g00006 - - gsj:114377374 1582.39