LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi436g00038	ATGGAAATGGCGAATTCATGTCAGGATTGCTCAATGCTCCACTCTTCCAATGTAGCTTCCGTTTCTGATGAAGAGGAACAACCTCAACCCATTCTTACTCGTGCCACTGAACTCACCATTTCCTTTCAAGGCCACGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGGTTCAGGCTGTACTGTTACTCTTAGAAGGGCATGAAACACCCAATACTGTCCCCACCTCTCACTTTTTGGTGCACCAAAACTATCAGGACATTTGGGGAATAAATGATACTTCGCGTAATTCAAAGCATTCGCGGAGATTTGCGTCACTGATTAGGTTCCGTGAGAAACGAAAAGATAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCTGCAAGGATGTTACGGAAGAATGGGCAGTTTACATCATTGAAGGAAGAGTACGGTTCTCATGCTGAAAACCAGGATTCTAACAATGGTACACCTTGTGCAAAATCTACTGAGCATAGATGTCAGCATTGTGGAATTGGTGAGAAGTCTACTCCAGTAATGCGTCGAGGACCATCTGGTCCAAGATCTCTATGCAATGCTTGTGGGATCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCCACAAATCAGGAAGGATTGCTTTTGAACAGAATGAACTGGATACTTCAGCTGCAGAGCCAGAAAATTCATGTGCTGCGCAGGACAAGGAGGAAAGCCCCCGGGAAGCAAAGCCCGTGTCAATGGATGCCATACAGTCACCTGAGATGATAGACGAACAGTATGTGCTCGAATCTGCTGAAGCAGTTATTGACAACTTGTCCATCCAAGTGGAGAACAATGCTCTTGATCTGCATGAGCAGGACAAAACTATGGAGGATCTTGCTGATGCTTCTGGGATCGAATTTGAGATCCCTGCAGGTTTTGATTATCAGGTTGATATTGATGATCCCAACATGAGGACTTACTGGTTGTGA	987	0.4468	MEMANSCQDCSMLHSSNVASVSDEEEQPQPILTRATELTISFQGHVYVFPSVTPQKVQAVLLLLEGHETPNTVPTSHFLVHQNYQDIWGINDTSRNSKHSRRFASLIRFREKRKDRCFEKKIRYTCRKEVAARMLRKNGQFTSLKEEYGSHAENQDSNNGTPCAKSTEHRCQHCGIGEKSTPVMRRGPSGPRSLCNACGIMWANKGTLRDLHKSGRIAFEQNELDTSAAEPENSCAAQDKEESPREAKPVSMDAIQSPEMIDEQYVLESAEAVIDNLSIQVENNALDLHEQDKTMEDLADASGIEFEIPAGFDYQVDIDDPNMRTYWL	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi436g00038	328	Pfam	tify domain	36	64	IPR010399	-
	Vivi436g00038	328	ProSiteProfiles	Tify domain profile.	31	66	IPR010399	-
	Vivi436g00038	328	Pfam	CCT motif	102	143	IPR010402	GO:0005515
	Vivi436g00038	328	ProSitePatterns	GATA-type zinc finger domain.	171	198	IPR000679	GO:0006355\|GO:0043565
	Vivi436g00038	328	Gene3D	-	163	223	IPR013088	GO:0006355\|GO:0008270
	Vivi436g00038	328	Pfam	GATA zinc finger	171	207	IPR000679	GO:0006355\|GO:0043565
	Vivi436g00038	328	MobiDBLite	consensus disorder prediction	222	256	-	-
	Vivi436g00038	328	ProSiteProfiles	CCT domain profile.	102	144	IPR010402	GO:0005515
	Vivi436g00038	328	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	166	218	-	-
	Vivi436g00038	328	SMART	GATA_3	165	218	IPR000679	GO:0006355\|GO:0043565
	Vivi436g00038	328	CDD	ZnF_GATA	170	213	IPR000679	GO:0006355\|GO:0043565
	Vivi436g00038	328	SMART	tify_2	31	66	IPR010399	-
	Vivi436g00038	328	PANTHER	GATA TRANSCRIPTION FACTOR 28	8	307	IPR045280	GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi436g00038	37	214	Tify Gene Family	AT1G51600	56.216	3.89e-62	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Vivi436g00038		CCT	2.3e-13	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi436g00038	-		-	mtr:11405700	486.493