Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi436g00024 ATGGCATCATCTTACTATTATTATCAGAAAACTCCTCTTCTTGCTTTCTTTTTCGTAACGTTATCACTCTTGCTAGTTGTAAAATCTCATGCAGCTCCATTATCATTCAACTATGACAACCTTAGTAGTGACAAAACAATTGCCTTCAATTTCTCAGGTGATGTCTCTCAAGACAACCAATCTCTCCAACTCACAAAGTACGAGAAAGACAGTCTAGGTAGAGTCACATACTCAAAACTGTTTCATCTTTGGGACACAAACACAGGTGAAGTCACAGATTTCACAACTCGTTTCTCCTTTACTATTAACACCCCCAACAAAACTCATCATGGAGATGGAATCACCTTCTACTTAGCACACCCGAATTTTCCACTGCCTGTTCCAAGAGACGGAAGTGGTATTGGCCTCGTGAGCCGAGAACAGTTGAGTAATCCAAATTACACAAAAGAAAATCCATTTGTGGCTGTGGAATTTGATACTTTTGTTAATGATTGGGATCCTAAATATGATCATGTCGGAATTGATGTTAATTCTATCGCCACTTCTTACACGACGCAATGGTTCACTAGTATGGACGAAAGAGGATATGATGCTGAAGTGAGTTACAATTCGAGTTCAAACAACATTACTGTCACCTTCACAGGCTATCAAGATAACAACATAATCCAACAGCACTTGTCAAGTGTTGTTAATCTGAAAGATAATCTACCTGATTGGGTTGAATTCGGATTCACTTCAGCAACAGGTTTCTGGTGGGAGTATCATACTCTTAACTCATGGTCTTTCAAGTCAAGTTCAGATTTTGAAGCTGACGAGAACGGAACAAACACGGGACTTGTTATAGGACTTGGTGTTATCGGTGGTGCTGCTGTTTTTATTTGTGTTATCGTGTTGGTTTGTTTTGTGAAACGGAAGCTGAGAAATACCAGAATGGAGGATGTTTTGCAGACGGATCTCGAAATGGATAATGATTTTGAAAGAAGCTCTCTACCTAGAAAGTTTACCTATGAAGAACTTGCTTCCGCAACAAACAACTTTGCAAAGGAATGCAAAATCGGAGAGGGTGGTTTCGGAGGAGTCTACAAGGGATTCATAAAAGACTTAAAAACTCATGTTGCAATTAAGAAAGTTTCTAAGGGATCAAATCAAGGAGTAAAGGAATATGCATCTGAAGTCAAAGTTATTAGCCAATTGAGGCAAAAGAATTTGGTTCAACTCTTTGGTTGGTGTCACAAGCAAAATGATCTTCTATTAGTTTACGAGTTCATGGAAAACGGAAGCTTAGATTCTTATCTTTTCAAAGGTAAAGGCTTGTTGACATGGCCCGTGCGATACAACATAGCTAGAGGCTTAGCCTCAGCGTTATCGTACCTACATGAAGAATGTGAAAAGTGTGTACTACATAGAGACATAAAATCAAGCAACATCATGTTGGATAGTAATTTCAACGCAAAGCTTGGAGATTTCGGTTTGGCGAGACTAATGAGCCATGAGACAGAATCAAAGACAACAGTTCTAGCAGGAACATATGGATATCTATCACCTGAGGCTGCAACCAGAGGTAGAGCTAGTAGAGAATCTGATGTATATAGTTTCGGAGTAGTTGCTTTGGAGATAGCTTGTGGTAGAAAAGCAATTGAGCCAAGTCTTGGTGAAGGACATGTTTACTTGGTGGATTGGGTTTGGGAGCTTTATGGTATAGGTGAAATTGTTAAAGCAGGTGATTCAAGATTGTATGGTGAGTTCAATGAGAAGGAGGTTGAGAGGTTGATGATTGTTGGACTTTGGTGTACTCATATAGATCATGTTCAGAGGCCTATGATTAGACAAGTTGTTCAGGTTCTTAATTTTGATGCTCCTTTGCCTACTCTTCCATTGCAGATGCATTCATCTTTCAATTCTGTGTCCTCTAAATTCAAGACTAGTGGTTTTGAAAATAACAAAAGTGGGATCTCTACTTCAAGCAATAGTACCTTCACAGGGTCATCACAATCAAGCACAGCATTTGAGGTTGTTTCTCCTTCTGCTGCTCTTCTAAATACATACAACACCATTTGA 2058 0.3921 MASSYYYYQKTPLLAFFFVTLSLLLVVKSHAAPLSFNYDNLSSDKTIAFNFSGDVSQDNQSLQLTKYEKDSLGRVTYSKLFHLWDTNTGEVTDFTTRFSFTINTPNKTHHGDGITFYLAHPNFPLPVPRDGSGIGLVSREQLSNPNYTKENPFVAVEFDTFVNDWDPKYDHVGIDVNSIATSYTTQWFTSMDERGYDAEVSYNSSSNNITVTFTGYQDNNIIQQHLSSVVNLKDNLPDWVEFGFTSATGFWWEYHTLNSWSFKSSSDFEADENGTNTGLVIGLGVIGGAAVFICVIVLVCFVKRKLRNTRMEDVLQTDLEMDNDFERSSLPRKFTYEELASATNNFAKECKIGEGGFGGVYKGFIKDLKTHVAIKKVSKGSNQGVKEYASEVKVISQLRQKNLVQLFGWCHKQNDLLLVYEFMENGSLDSYLFKGKGLLTWPVRYNIARGLASALSYLHEECEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLMSHETESKTTVLAGTYGYLSPEAATRGRASRESDVYSFGVVALEIACGRKAIEPSLGEGHVYLVDWVWELYGIGEIVKAGDSRLYGEFNEKEVERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPTLPLQMHSSFNSVSSKFKTSGFENNKSGISTSSNSTFTGSSQSSTAFEVVSPSAALLNTYNTI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi436g00024 685 Gene3D - 32 279 - -
Vivi436g00024 685 FunFam Lectin-domain containing receptor kinase A4.3 423 634 - -
Vivi436g00024 685 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vivi436g00024 685 CDD lectin_legume_LecRK_Arcelin_ConA 34 265 IPR001220 GO:0030246
Vivi436g00024 685 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 266 IPR013320 -
Vivi436g00024 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vivi436g00024 685 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Vivi436g00024 685 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524
Vivi436g00024 685 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Vivi436g00024 685 Pfam Protein kinase domain 348 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi436g00024 685 Pfam Legume lectin domain 34 271 IPR001220 GO:0030246
Vivi436g00024 685 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi436g00024 685 CDD STKc_IRAK 352 616 - -
Vivi436g00024 685 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi436g00024 685 FunFam L-type lectin-domain containing receptor kinase IX.1 331 422 - -
Vivi436g00024 685 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Vivi436g00024 685 SUPERFAMILY Protein kinase-like (PK-like) 329 635 IPR011009 -
Vivi436g00024 685 PANTHER - 54 622 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi436g00024 19 628 Receptor kinase-like Gene Family AT5G10530 45.192 1.11e-169 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi436g00024 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi436g00024 - - cam:101491058 1028.85