Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi431g00027 ATGGACGATTACGGCAGCAGCGACGATGATTATCGTTACTCTGATCAAGAAGAATCCGATTGCGAATTGTACGAAAATAATGATCAGAACTTTGAGTTACTCTCTTCCACTGCTCAGGTGATTACTGAGGAATCATTGCTAGCTGCACAGAAGGAGGATTTGCGCCGAGTGATGGACATGCTTTCTGTAAGACAACATCATGCACGTACGCTGCTAATTTATCATCGCTGGGATGTGGACCATTTGTTTGAAGTTTATGTGGAAAAAGGGAAGGCATATATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAGTGTCGTGGCTCTAACTCACTTCTTAGTGCTTCGGTAATGTGTGAAATCTGCATGGACGACATTCCTAGTGATGAAGTAACAAGAGTGGATTGTGGTCACTGCTTTTGCAACTCCTGTTGGACACAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAGTGTAATTCCATTTGTGATGAATCTGTCGTAAGAACTCTACTCGCTAGAGAGCACCCTGATATGGCAGAGAAGTATGAACGATTTCTTCTTGAGTCCTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGTGGAGGGTGATAATTTGTGTGAAGTAGAATGTTCATGTGGAGATCAGTTTTGTTTTAATTGCTTGGCAGAAGCACACTCACCCTGTTCATGTTTAATGTGGGAGCTTTGGGAAAAGAAGTGTCGGGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGTTGTAATTTGGTTAGCTGTATTTGTGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGGGATCATACTTGGTCGAGTATAGCGGGTCATAGCTGTGGTCGCTTCAAAGAACAAGAGAAAACAGCTGAGCGGGCAAAGAGGGATCTGTATCGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGATACTATACGAGGGAGGATTTCTAAATCGGAAGAGACAAAAAGTTCTGAACTCAGTGATTATAGCTGGGTACATAATGGACTCTCTAGACTTTTCAGATCTAGGCGTGTCCTTTCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGATTTTTAAAGAAGAAATGTCAGAAGCTGAAAGGGTAATCAAGCAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAGTCAAATGTTGAAAAACTCTCTAAGATGCTGGAGGAGCCTTTTGATACTTTTGAATATGATAAGGTTATGGAGATAAGAATGCAGATAATAGATCTGTCAACACTGATTGATGGTCTTTGTAAGAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTATTAATCTTGGTACTATTCACGGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCGGAACTTCAAGTTTGTTGGAGCAATAAAGCCAACAATATGGGTGTAACAGCAGAGTTTGATCGGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGTGCCAGAAAAGACGGTGAAATGTTTGATCTAAACTTGCCAGCTGATGCTCTAGACAGAATCTGA 1713 0.4104 MDDYGSSDDDYRYSDQEESDCELYENNDQNFELLSSTAQVITEESLLAAQKEDLRRVMDMLSVRQHHARTLLIYHRWDVDHLFEVYVEKGKAYMFAQAGVSVDECRGSNSLLSASVMCEICMDDIPSDEVTRVDCGHCFCNSCWTQHFIVKINEGQSKRIRCMAHKCNSICDESVVRTLLAREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDNLCEVECSCGDQFCFNCLAEAHSPCSCLMWELWEKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRFKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDTIRGRISKSEETKSSELSDYSWVHNGLSRLFRSRRVLSYSYAFAFYMFGDEIFKEEMSEAERVIKQNLFEDQQQQFESNVEKLSKMLEEPFDTFEYDKVMEIRMQIIDLSTLIDGLCKKMYECIENDLLGSINLGTIHGIAPYKSKGIERASELQVCWSNKANNMGVTAEFDRSEESGCSSRKRARKDGEMFDLNLPADALDRI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi431g00027 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 203 IPR013083 -
Vivi431g00027 570 FunFam RBR-type E3 ubiquitin transferase 112 203 - -
Vivi431g00027 570 FunFam RBR-type E3 ubiquitin transferase 247 495 - -
Vivi431g00027 570 SUPERFAMILY RING/U-box 189 257 - -
Vivi431g00027 570 CDD Rcat_RBR_ARI1-like 272 325 - -
Vivi431g00027 570 SMART ibrneu5 189 251 IPR002867 GO:0008270
Vivi431g00027 570 SMART ibrneu5 259 324 IPR002867 GO:0008270
Vivi431g00027 570 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 40 402 IPR031127 GO:0004842|GO:0016567
Vivi431g00027 570 CDD RING-HC_RBR_TRIAD1 116 169 - -
Vivi431g00027 570 SUPERFAMILY RING/U-box 258 316 - -
Vivi431g00027 570 Gene3D - 247 495 - -
Vivi431g00027 570 CDD BRcat_RBR_ANKIB1 196 260 - -
Vivi431g00027 570 ProSiteProfiles TRIAD supradomain profile. 114 328 IPR044066 -
Vivi431g00027 570 Pfam Ariadne domain 329 569 IPR045840 -
Vivi431g00027 570 SUPERFAMILY RING/U-box 116 201 - -
Vivi431g00027 570 ProSiteProfiles Zinc finger RING-type profile. 118 166 IPR001841 -
Vivi431g00027 570 Pfam IBR domain, a half RING-finger domain 189 251 IPR002867 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi431g00027 58 520 ARIADNE family AT2G16090 71.092 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi431g00027 K11968 - gmx:100783343 946.036