Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi427g00019 ATGGCACCACCCAATCCGAAAGTTATAGCGGCTTTCCGCGCAATGACCAACCTTGGAATTCATGAATCCAAAGTCAAACCAGTTTTAAAGAAACTGATTAAATTGTATGAAGGAAACTGGGAGCTTATTGAAGAAGAGAATTATAGGGCTCTTGTCGATGCTATTTTCGAAGAAGAAGATAATCAGGAAGGAGGGATTGAGGCTGAAGCTCCTGCGCCAGTACAGCAAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAGGATGGTCAAATTTTACGCCTTCCGACTAGTGGCGATAGCCCAAGTTTAGTTGTCTCTCCAGTGAAATCACGCCTTCCAACTAGTGGCGGTAGCCCAAGTTCACCCGGTTCTCCATTGAAATCACGCCTTCCGACTAGTGGCGGTAGCCCAAGATCACCTGCCGCCTCTCCATTGAAATCACGCGGTAGCCCTAGTTCACCTGCCTCCTCTCCATTGACATCACCTAAACCAAGACCTGGCACAGTACCTGAAAGTGGTTCCGAACTGCAGCCTCAAAGCCCATCCGTGTTATCCAGAAGAAATGCCCTTGCTGACAAGGGAAAGAAGCCTATCTCACCTCTAGATACTTCAAGAAGGAGAAAATCTATATCTGACAGAAGTCCATCTAAAGAACGGGCTGTTGAACCAGGAACCTCTCCATCGCCAAAAACCAAGACGCCCCATCCTTATCCTTTTATCACCCCCAAGGAAGAGCCTGTCGATGAAGAGGCAGATTATGAGGTTCCCATTTCAATGGTTTTTCCTGAACCTCTAAGTGCCGGAGAGCAAGATGACAGCAACGCAATGGCATCACAATGCAGGAACGAAAATGCTGAAGATGAAGCCTCGGTTGCATCTCAAGTTCCTGTTTCTCTACCCTCCCCAAGTGACCCAGATGACATAACAAAGGGAGAAGAAAAAGTGAAAATTCCATGGTTGAATAATTCTACTAATGATAAGCCGCCTTTGTTTCACTACATGCCCCAAAACACGGTGTTCCAAGATGCATATGTTAATATTTCTCTATCACGTATTGGGAACAAAGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGGGATTTTGCTTATACTGCACAAGGTGTAGTAAAGGAAGAGTTCTTGGAAGAGTGTATTGCCAACAGCCGCACTCAAAGTTTTACCTATTGCAAAGAATGCCCACTTGAAACATCAAAGAATGATGGCTGTTTAGAACCATGTAAAGGACATTTGAAGAGGAAATTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGATTGTCCAGCGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAGATGGAAAAGGGTGGGGTCTTCGCACCTTAGAGGAACTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTCTGACAGTCAGAGAGCTGCATGAGAGGAACAAAGCTAGAAAATATACTTTACCAATTTTGTTGGATGTAGAATGGGGCTCGGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCAGCCCGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCGGTTGAAATTGAGAGTCCATCTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAGAAATCAAAGCACAGGAAGAGTTGACCTGGGATTACGGCATCGACTTTGATGGCGATGATCAGTCACTTGAGCTGTTTAAGTGCAAATGTGGCAGTAGATTCTGCAGGAATATGAAGCGAACAAATAGAACAGTTAGATCGTTCGCTGCTGCGTGA 1887 0.4409 MAPPNPKVIAAFRAMTNLGIHESKVKPVLKKLIKLYEGNWELIEEENYRALVDAIFEEEDNQEGGIEAEAPAPVQQVRPLKRLRLRGQDGQILRLPTSGDSPSLVVSPVKSRLPTSGGSPSSPGSPLKSRLPTSGGSPRSPAASPLKSRGSPSSPASSPLTSPKPRPGTVPESGSELQPQSPSVLSRRNALADKGKKPISPLDTSRRRKSISDRSPSKERAVEPGTSPSPKTKTPHPYPFITPKEEPVDEEADYEVPISMVFPEPLSAGEQDDSNAMASQCRNENAEDEASVASQVPVSLPSPSDPDDITKGEEKVKIPWLNNSTNDKPPLFHYMPQNTVFQDAYVNISLSRIGNKDCCSTCMGNCVLSSKPCSCANKTGGDFAYTAQGVVKEEFLEECIANSRTQSFTYCKECPLETSKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGITCNLQVFLTSDGKGWGLRTLEELPKGAFVCEFVGEILTVRELHERNKARKYTLPILLDVEWGSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEIESPSHHYYHFAFFTSREIKAQEELTWDYGIDFDGDDQSLELFKCKCGSRFCRNMKRTNRTVRSFAAA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi427g00019 628 MobiDBLite consensus disorder prediction 91 251 - -
Vivi427g00019 628 Pfam SET domain 473 590 IPR001214 GO:0005515
Vivi427g00019 628 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 621 - -
Vivi427g00019 628 CDD SET_SETDB-like 330 590 - -
Vivi427g00019 628 ProSiteProfiles SET domain profile. 461 590 IPR001214 GO:0005515
Vivi427g00019 628 SUPERFAMILY SET domain 316 613 IPR046341 -
Vivi427g00019 628 MobiDBLite consensus disorder prediction 173 187 - -
Vivi427g00019 628 MobiDBLite consensus disorder prediction 94 157 - -
Vivi427g00019 628 SMART preset_2 306 445 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi427g00019 628 SMART set_7 461 596 IPR001214 GO:0005515
Vivi427g00019 628 Pfam Pre-SET motif 309 453 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi427g00019 628 MobiDBLite consensus disorder prediction 265 311 - -
Vivi427g00019 628 MobiDBLite consensus disorder prediction 190 220 - -
Vivi427g00019 628 Gene3D SET domain 309 615 IPR046341 -
Vivi427g00019 628 ProSiteProfiles Pre-SET domain profile. 358 458 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi427g00019 628 MobiDBLite consensus disorder prediction 272 301 - -
Vivi427g00019 628 Gene3D - 1 61 IPR043017 -
Vivi427g00019 628 Pfam Ubiquitin-binding WIYLD domain 7 61 IPR018848 -
Vivi427g00019 628 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 627 IPR025776 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi427g00019 308 613 Su(var)3-9 homologs AT1G73100 29.052 1.59e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi427g00019 Pre-SET 3.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi427g00019 - - vvo:131631182 1211.05