Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi427g00012 ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTTCCCAGCAGCTGAATAACATAGGAATGTCTGGAGCTCTTCCTTCATCGATGTCTATCCATCCAACACCTCTAGACGAGACATACCCCAGATTATCTGATTCGCAGCAAGCTTTTATGGAAAAAGATCTTAAGACAAGAACCTTTACTCATGCAAGTCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCAACAGACCTTCATCACTCATCCCTTTCACCTCATGAAAAATCCTCTAGAAATGCTCAATTTATTGTACAGCCATTGAGTAGTGTGACTCCAGTGCCATTACCGTATTCTTCAAATAATGGACCAGTACCTTCTACCACATCAACACATTATTCCAATGGAAACAGTGCTTCATGGCATGCAGATTCCCTGCCTAGCTTTCTTGATTTCTCAGCGAATGCCTCAATTAATAATAATCCATTAGAGAATAGTGACTGCAATATTATGGCTACTGAGGAGTTTTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGACGATACTTTGACTTCTAATTGGAATGATATTCTTGCTGATAATATTCAAGATCTTGAGCCAAAGGCGGTGGATCCCATTTCAAAGTCATCTTCACAGTTTTCAGCAGGACACCAATCCCAAGGCCATCAACAACTTCCAGCTATATCTGGAGAAAACCATGTTGGTGTTGCTCCATCTTCCTCAGCAAATTCTGCATCTGCCAAGCCACGGATGCGTTGGACTCCTGAGCTTCACGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGTGGAAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGACTAACTATATATCATGTTAAAAGCCACTTACAAAAATACAGGACTGCTAGATATAGACCAGAGTCATCTGAAGGAGCTGGAGAGAAAAAACTAAGCCCCATTGACGATATTTCATCTCTAGATTTAAAAACTGGTATTGAGATAACAGAAGCTCTACGACTGCAAATGGAGGTTCAGAAGCGGTTGCACGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAGCAGGGCAGGTACCTCCAGATGATGTTCGAGAAACAATGCAAATCTGGTGTTGAACCTTTTAAGGCATCATCGTCGGCCATTGAGAATCCATCAGGAGTGTCTCCTGACCCCATAAAAGATCCTTTTACCAAAAATGAATCAGAAGCATCTAAAACGGACCTTTGCAGGTCAGAATCTGATCAAGCTAATGGTAGTACCACAGTTGAGGATAGCTCGCCGGAAGCTGGTGGGAAACAGGATACCTTCAAAGCCCAAGCTTCTGAGGATCTTAAGCATAATGATAATGAAGATAGCCATCAAGCCTCTAAGCGGCCAAGGACAGATGAATAA 1467 0.4281 MEARPAFSIERSSSQQLNNIGMSGALPSSMSIHPTPLDETYPRLSDSQQAFMEKDLKTRTFTHASHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKSSRNAQFIVQPLSSVTPVPLPYSSNNGPVPSTTSTHYSNGNSASWHADSLPSFLDFSANASINNNPLENSDCNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDILADNIQDLEPKAVDPISKSSSQFSAGHQSQGHQQLPAISGENHVGVAPSSSANSASAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKKLSPIDDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIENPSGVSPDPIKDPFTKNESEASKTDLCRSESDQANGSTTVEDSSPEAGGKQDTFKAQASEDLKHNDNEDSHQASKRPRTDE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi427g00012 488 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Vivi427g00012 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Vivi427g00012 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Vivi427g00012 488 MobiDBLite consensus disorder prediction 115 135 - -
Vivi427g00012 488 MobiDBLite consensus disorder prediction 435 453 - -
Vivi427g00012 488 Coils Coil 350 370 - -
Vivi427g00012 488 MobiDBLite consensus disorder prediction 420 434 - -
Vivi427g00012 488 FunFam Myb family transcription factor 261 319 - -
Vivi427g00012 488 MobiDBLite consensus disorder prediction 463 488 - -
Vivi427g00012 488 MobiDBLite consensus disorder prediction 399 488 - -
Vivi427g00012 488 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Vivi427g00012 488 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Vivi427g00012 488 Gene3D - 261 320 - -
Vivi427g00012 488 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 236 480 IPR044848 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi427g00012 1 404 G2-like Transcription Factor Family AT4G28610 49.512 1.12e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi427g00012 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi427g00012 - - gmx:100810560 730.709