Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi425g00009 ATGTATCATTTCCTCATTGCTAGATTCACCCATCATAGGATCCTTCACTCTACTGTTCTATGCCGCAATGCTTATTCTCTTTTCTTCAATTCTTGTTCTTTCTCTGTTTCTAACACAAACCACCATCACCAAACCGACAACCTTACCTTGTCAAACCTCGTAAATTCATGCGGTCTGTCCCCTGAAACTGTCCTTAAACTCTCCAAAAGGTTGCAAACCATAAACCCTAATGGCCCAAATGCTGTAGTTCAACTTCTCACCAACTATGGTTTCTCTGATTCCCAATTACGTAGCTATGTCAAGAAACAACCTTTGGTACTTTTATCAGATGCTGAAAAGACGCTTTTGCCAAAGCTCAAATTTTTGCAATCCATTGGGGTTTCCACCACTGACCTCCCCAAAATCCTAATCGGAAACACTTTCTTTTTGTCAAGAAGCTTAGAGAAACACATAAGGCCTCGTTATGAGGTCATTAGAAGCCTAGTTTCCAATGATAAAGAGGTGGTTTCAGCTTTGAAGTACGGGTCTTGGAACCTTCGCTGTGGTTGGGTTGTAAATGATGCAGTTCTCAACATTGAGGTTTTGAGGAAGCATGGTGTGCCTCAACCTTGCATTTCCCTTTTGGTATCCAATTTTCCTGGTGTAGCATTCACCAAGCATTCTATATTTGTTGAGGCTGTTAATTCAGTCAAGGAAATGGGGTTCGACCCTTTCAAGTCGAATTTTGTTTTGGCACTCCAGGTGTTTGCGAAAATGAATAAGGATATTTGGGAATCAAGATTTAAGATTTTCGAGAGATGGGGTTGGTCAAGAGATATGTGTCTTTCCGCTTTCTTAAAGTATCCGCAATATATGATGATTTCAGAAAAGAAGATTATAAAAGCAATGAACTTCTTGGTGAATGATGTTGGTGTTAGCCCCAAAGATATTGTGAGATGGCCTGGTATGTTGAACCGCAACTTCGAGAAGACATTTATCCCTAGATGGGCTGTTGTAAAAATTTTGAGGTCAAGGGGTTTGGTAAAGAGTGATTTACTCATAAGTAGCATTATTTCGATAACTGAGAAAAAGTTTTTGAAAAGATATGTAACCCGATTTCAAAAAGATGTGCCTCAGTTATTGGATGCATATAATGGTCAGATAATTGATCATCTTGGTATCCTCTAA 1167 0.3925 MYHFLIARFTHHRILHSTVLCRNAYSLFFNSCSFSVSNTNHHHQTDNLTLSNLVNSCGLSPETVLKLSKRLQTINPNGPNAVVQLLTNYGFSDSQLRSYVKKQPLVLLSDAEKTLLPKLKFLQSIGVSTTDLPKILIGNTFFLSRSLEKHIRPRYEVIRSLVSNDKEVVSALKYGSWNLRCGWVVNDAVLNIEVLRKHGVPQPCISLLVSNFPGVAFTKHSIFVEAVNSVKEMGFDPFKSNFVLALQVFAKMNKDIWESRFKIFERWGWSRDMCLSAFLKYPQYMMISEKKIIKAMNFLVNDVGVSPKDIVRWPGMLNRNFEKTFIPRWAVVKILRSRGLVKSDLLISSIISITEKKFLKRYVTRFQKDVPQLLDAYNGQIIDHLGIL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi425g00009 388 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 Pfam mTERF 255 359 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 Pfam mTERF 84 306 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 Gene3D Transcription termination factor 3, mitochondrial 183 369 IPR038538 -
Vivi425g00009 388 Gene3D Transcription termination factor 3, mitochondrial 45 182 IPR038538 -
Vivi425g00009 388 PANTHER CGI-12 PROTEIN-RELATED 50 365 IPR003690 GO:0003690|GO:0006355
Vivi425g00009 388 FunFam Mitochondrial transcription termination factor-like 147 370 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi425g00009 mTERF 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi425g00009 K15031 - gmx:106799612 424.091