Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00011 ATGGGAAACAACGTTTGCATTCTTCATTGTGTTCCTATAAAAACCAAAAAAAGAAAAACCATTAAACAAAACCTCTTATCTCCATCATCACCTCAACCAACCCTAACCCTAGACAATTATTTTGAAACAAATGAAGTTACTATTCCCACCCCACTTCCCATAGAAGGAGTCCCCTTTTATGATTGTGAAATTTGTTACGAATCAAAGCCTCTAAATGACTCATTCGACGTACAAGGTTGCACTCATTTCTTTTGCACAAAATGCACAATTAAATACATAGTTTCAAATCTACAACAAAACAAGGTTAACCTAACTTGTCCGGAACTAGGTTGTTCCGGAACATTGGATCCTCAATATTGTAAACCAATTTTACCTACCAATGTTATGGATTGGTGGGAGAAAGCTTTGAGTGAATCGGGGATTCCGGAAAAGAATAAATTTTATTGTCCATTTTATGATTGTTCGACACTTTTAATTAGTGAGGAATATCGCGTAGGAGGAGTGATTCGAGATTCTACGAATTCTACTTGTCCTCATTGCAATAGAAGGGTTTGTGCTAAGTGTAAAACTCCTTGGCACGAAGATATGAGTTGTCAAAAGTTTCAAAGATTGAAGAATAGTAATGAGGCTCTTATGGTTGATCTTGCTGGTAGAAGGAAATGGAAAAAATGTCCAAATTGTAAAAGTTTTATTGAAAAATCTCAAGGATGCGATCACATGATATGCAGGTGTTCTTATGTGTTTTGTTATCAATGTGGACGTGGCATTGATCCTCGTAACCATGGTTGTAATCACAGAGATTGA 804 0.3619 MGNNVCILHCVPIKTKKRKTIKQNLLSPSSPQPTLTLDNYFETNEVTIPTPLPIEGVPFYDCEICYESKPLNDSFDVQGCTHFFCTKCTIKYIVSNLQQNKVNLTCPELGCSGTLDPQYCKPILPTNVMDWWEKALSESGIPEKNKFYCPFYDCSTLLISEEYRVGGVIRDSTNSTCPHCNRRVCAKCKTPWHEDMSCQKFQRLKNSNEALMVDLAGRRKWKKCPNCKSFIEKSQGCDHMICRCSYVFCYQCGRGIDPRNHGCNHRD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00011 267 CDD Rcat_RBR_unk 220 253 - -
Vivi423g00011 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 141 IPR013083 -
Vivi423g00011 267 SMART ibrneu5 130 198 IPR002867 GO:0008270
Vivi423g00011 267 SMART ibrneu5 199 263 IPR002867 GO:0008270
Vivi423g00011 267 Pfam IBR domain, a half RING-finger domain 143 198 IPR002867 GO:0008270
Vivi423g00011 267 Pfam IBR domain, a half RING-finger domain 218 258 IPR002867 GO:0008270
Vivi423g00011 267 ProSiteProfiles TRIAD supradomain profile. 58 267 IPR044066 -
Vivi423g00011 267 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 258 IPR031127 GO:0004842|GO:0016567
Vivi423g00011 267 SUPERFAMILY RING/U-box 59 142 - -
Vivi423g00011 267 FunFam RBR-type E3 ubiquitin transferase 58 143 - -
Vivi423g00011 267 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Vivi423g00011 267 Gene3D - 196 267 - -
Vivi423g00011 267 SUPERFAMILY RING/U-box 209 266 - -
Vivi423g00011 267 SUPERFAMILY RING/U-box 144 203 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00011 55 253 C3H Transcription Factor Family AT2G19610 31.250 3.44e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00011 K11975 - psat:127136274 263.462