Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00010 ATGCGGGAGATTAAGGATAGGCACCTCCGGAAAACACTGGTCAATGCAGGATATGCATTAACTCAACTTACATTCCAACATTATTGGAGTGAAATTGTATTGTCAAATCCGGATGCGGGAAGTTGGATTGATAATCTTTCTAGGGAGAAATGGACCAGGGCTTACGACAACAACGTGCGATGGGACCACATGACAACAAATCTAGTAGAATCCATGAATGGTATTTTTAAGGGCATTCGAAACCTTCCTATCACTGCACTGGTGGAGGCAACCTACTTTAGGATGACTTCGATATTCTCAACAAGAGGTACAAGGTGGAGTGCTGTTAAAGAATCGGGTCAACTGTTCAGCGAGAGTTGCATAAAAATTATGAAAGAACAATCAGTAAAGGCCAATAGTTATCATGTAACTGCTTTTGATCGATTCAACCGCACCTTCAGTGTTCGAGATATCATTGACCACAATGAAGGATTGCCGAGACAACAATATAGGGTTCTACTAGATGAGCATTGGTGCGACTGTGGAAAGTTTCAAGCATTTCAATCCACGTTTTATGGATTTGTTGCACATTGTAGCAGTGAAAAGAGTGATAGTGGGAGACTCTCTCAACTCATTCACCAAAGCCACAACAAAACCCTAATGGTGACAACAACGAGAAGAAGAGGTGGTGTTCCACCGTCCACCTCGGTGGTCGTCAAACCATTTCTCTTCTCCCCAGACAGAAACATCTCCGCTATCATCAATCTTTGCAGTCAACAAGATAACAATCCTAGGATCATCAGTTACATTCCTTTCGTTTGCGAAATCTGCACAGACACTAAATCAATGAAAGAAGCTTTCTGCATCATAGCTTGTTCCCACACTTATTGCTGCGAGTGCGTCGTTATGTACATTTTTTCAAATCTGCAAAACAACGTCACCAACATTCGTTGTCCCTTTATTGGGTGCACTGGTTTATTGGAAGCCGAGAGTTGTCGTAGGATTCTTCCAGCAGAGATTTATGATCGGTGGGGGAAGGCATCTTGCGAGGCTATGTTTGATGTTTCATTGAAAGTTTATTGTCCCTTTGCAGACTGTTCGGTTCTCATGATCAAAGACCGGAAGGAGGAGGTTATTAGAAGATCGAAATGTCCGAATTGTAAGAGGATGTTCTGTGCAGAATGTAAGGTTACATGGCATGAAGGAATCGAATGCATTGAGTTCCAGAAACTGAATGCCGATGATAAAAGTAACGAAGGTGTTATGTTGATGCGCCTTGCCAAGGACAAGAAGTGGAAGAGATGCCCTAATTGCAGAGTTTATGTTGCCAGATCTGCGGGATGCAACCACATGACATGCAGGTGTCTATGTAGATTTTGTTACAGATGTGGAGATGTTTCCAACTTTACGAACTCTTGCAGTTGTTTTAAGCCCAACCGCGTCCCTGTCCGTAGGGTTCAACAACCAGAACGGCTTACTTTTCAAAGACTTGTCACAAGAATTATCGTTTGTGCTCTCATTTGTATTCCGATCATTATAATTAAATCTGTTTTATTTTAA 1539 0.4204 MREIKDRHLRKTLVNAGYALTQLTFQHYWSEIVLSNPDAGSWIDNLSREKWTRAYDNNVRWDHMTTNLVESMNGIFKGIRNLPITALVEATYFRMTSIFSTRGTRWSAVKESGQLFSESCIKIMKEQSVKANSYHVTAFDRFNRTFSVRDIIDHNEGLPRQQYRVLLDEHWCDCGKFQAFQSTFYGFVAHCSSEKSDSGRLSQLIHQSHNKTLMVTTTRRRGGVPPSTSVVVKPFLFSPDRNISAIINLCSQQDNNPRIISYIPFVCEICTDTKSMKEAFCIIACSHTYCCECVVMYIFSNLQNNVTNIRCPFIGCTGLLEAESCRRILPAEIYDRWGKASCEAMFDVSLKVYCPFADCSVLMIKDRKEEVIRRSKCPNCKRMFCAECKVTWHEGIECIEFQKLNADDKSNEGVMLMRLAKDKKWKRCPNCRVYVARSAGCNHMTCRCLCRFCYRCGDVSNFTNSCSCFKPNRVPVRRVQQPERLTFQRLVTRIIVCALICIPIIIIKSVLF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00010 512 Pfam IBR domain, a half RING-finger domain 351 398 IPR002867 GO:0008270
Vivi423g00010 512 ProSiteProfiles TRIAD supradomain profile. 263 472 IPR044066 -
Vivi423g00010 512 CDD BRcat_RBR_unk 348 401 - -
Vivi423g00010 512 SMART ibrneu5 335 398 IPR002867 GO:0008270
Vivi423g00010 512 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Vivi423g00010 512 SUPERFAMILY RING/U-box 414 470 - -
Vivi423g00010 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 349 IPR013083 -
Vivi423g00010 512 Gene3D - 352 399 - -
Vivi423g00010 512 SUPERFAMILY RING/U-box 345 403 - -
Vivi423g00010 512 Gene3D - 400 490 - -
Vivi423g00010 512 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 174 470 IPR031127 GO:0004842|GO:0016567
Vivi423g00010 512 SUPERFAMILY RING/U-box 265 345 - -
Vivi423g00010 512 CDD Rcat_RBR_unk 424 458 - -
Vivi423g00010 512 ProSiteProfiles Zinc finger RING-type profile. 267 312 IPR001841 -
Vivi423g00010 512 FunFam RBR-type E3 ubiquitin transferase 263 348 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00010 267 457 C3H Transcription Factor Family AT2G19610 31.000 9.11e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00010 K11975 - vvo:131649828 332.413