Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00008 ATGAAAGAAGCTTTCTACATCGAAGCTTGTTCCCACACTTATTGCTCCGAGTGTGTCGTAATGTACATTGATTCAAATCTGCAAAACAACATCAGCAACATCCGTTGTCCCTTTATTGGTTGCACTGGTTTGTTGGAAATCGATAGTTGTCGTAGGATTCTTCCGGCGGAGATTTTCGATCGGTGGGGGCAGGCGTCCTGCGAGGCGATGTTTGATGCTTCGGTGAAAGTATATTGCCCCTTTGCAGACTGTTCAGCTCTTTTGATCAAAGACAGTAAAGAGGAGGTTCTTGGAAGATCGAAATGTCCAAATTGTAAGAGGATGTTGTGTGCAGAATGTAAGGTTTCATGGCATGAAGGAATGGAATGCAGCGAGTTCGAGAAAATGAATGCTGACGAGAAAGATGACGAAGGTGTTATGTTGATGAGCCTTGCCAAGGATATGGGGTGGAGGAGATGCCCTAATTGCAGATTTTATGTTGCCAGATCTGAGGGTGTCGATGTAGATTTTGTTACAAATGTGGAGATATTTTCTTGTCCAAAATTTTTGAAGACTTGTGCAGTTGCTCCAAGCGGGGCCGGGCCGGCCCGTACGTTTCAACAATTCCTCACTTCTGAAAGACTCGTTGCAAGAATCGCATATCGTTTACGCTGCCATTTGTATTCACAACATTAA 675 0.4415 MKEAFYIEACSHTYCSECVVMYIDSNLQNNISNIRCPFIGCTGLLEIDSCRRILPAEIFDRWGQASCEAMFDASVKVYCPFADCSALLIKDSKEEVLGRSKCPNCKRMLCAECKVSWHEGMECSEFEKMNADEKDDEGVMLMSLAKDMGWRRCPNCRFYVARSEGVDVDFVTNVEIFSCPKFLKTCAVAPSGAGPARTFQQFLTSERLVARIAYRLRCHLYSQH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00008 224 ProSitePatterns Zinc finger RING-type signature. 10 19 IPR017907 -
Vivi423g00008 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Vivi423g00008 224 SUPERFAMILY RING/U-box 70 128 - -
Vivi423g00008 224 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 10 191 IPR031127 GO:0004842|GO:0016567
Vivi423g00008 224 SMART ibrneu5 60 123 IPR002867 GO:0008270
Vivi423g00008 224 Pfam IBR domain, a half RING-finger domain 75 123 IPR002867 GO:0008270
Vivi423g00008 224 CDD BRcat_RBR_unk 76 126 - -
Vivi423g00008 224 SUPERFAMILY RING/U-box 4 70 - -
Vivi423g00008 224 ProSiteProfiles TRIAD supradomain profile. 1 206 IPR044066 -
Vivi423g00008 224 Gene3D - 77 129 - -
Vivi423g00008 224 FunFam RBR-type E3 ubiquitin transferase 1 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00008 3 165 C3H Transcription Factor Family AT2G19610 26.901 1.66e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00008 K11975 - mnt:21402499 223.787