Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00007 ATGGCTTCGGAAGCTACTCCAAGGAGAAGAAGGAATCGAGTTCAACCTTCCACACCGGAGGTAATCGACCTCGACTCTTTCCGCTCATACAACAAGCGAACCATGTCTGCTGCAACCATCTCTTCCGTCATCAACCTTTCTGACGAAGAAGACGACGACATTAAGATCCTCGATTTCATTCCTAAGAACACTTTTTTAAGGAAACGCAAAAGAATTTTCGAAAAAGGAGAGTCTTCAAATTCGAGTAACATTCCGTTCGTCTGCGAAATCTGCACGGACACTAAAACAATGAAGGAAGCTTTCTACATCAGCGGCTGCTCTCACGCGTATTGCTCTGATTGCGTCGCAAATTACATCGGTTCCAAGCTTGAAGATAACATCGTCAACATCTCATGTCCAGTTCCCGAATGCAAAGGTTCTTTGGAAGCGCAGATTTGCCGGACTATTCTTCCGGCCGAGGTTTTTGAAAAGTGGAGTAAAGGTTTGTGCGAGGCTTTGATCAATGCTTCGCAGAAATTCTACTGTCCCTTTGCAAACTGCTCTGCTCTTTTGATCAATGACGAAACCGAGGCGGTTACTAATTCAGAATGCCCTAATTGTAATAGGATGTTCTGTGCACAATGTAAGGTTCCGTGGCATGATGGAATCAAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGGTGCGCCTCGCACAGAATAAGCACTGGAGGCGATGCCCTAATTGCAAAATTTATGTTGCCAGAACAATGGGCTGCAACATCATGAGATGCAGGTGTCAGTGTAGTTTTTGTTACAAGTGTGGAGGAACCTACACTCGCACTGCTGCTGGCAGGTGCACTTGTAATGGAACTCCCCAACAACCTACACCGGTTTTTCACGGAACAACTGTCTCTAATAGTTATCTCAACTATTCGGGTCAACAACAACAAACTCCTTATGGTGTTTACACAGGAAAATATGGGACTGGTGGAACTTATTCTTATGGGAGCTCCTTCTATCCGGGTCGACGATAG 1041 0.4544 MASEATPRRRRNRVQPSTPEVIDLDSFRSYNKRTMSAATISSVINLSDEEDDDIKILDFIPKNTFLRKRKRIFEKGESSNSSNIPFVCEICTDTKTMKEAFYISGCSHAYCSDCVANYIGSKLEDNIVNISCPVPECKGSLEAQICRTILPAEVFEKWSKGLCEALINASQKFYCPFANCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGIKCSEFQKLNAGEREKEDIMLVRLAQNKHWRRCPNCKIYVARTMGCNIMRCRCQCSFCYKCGGTYTRTAAGRCTCNGTPQQPTPVFHGTTVSNSYLNYSGQQQQTPYGVYTGKYGTGGTYSYGSSFYPGRR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00007 346 CDD Rcat_RBR_unk 244 277 - -
Vivi423g00007 346 SUPERFAMILY RING/U-box 162 223 - -
Vivi423g00007 346 Pfam IBR domain, a half RING-finger domain 162 218 IPR002867 GO:0008270
Vivi423g00007 346 Pfam Zinc finger, C3HC4 type (RING finger) 88 133 IPR018957 GO:0046872
Vivi423g00007 346 ProSiteProfiles TRIAD supradomain profile. 84 299 IPR044066 -
Vivi423g00007 346 ProSiteProfiles Zinc finger RING-type profile. 88 136 IPR001841 -
Vivi423g00007 346 SUPERFAMILY RING/U-box 229 291 - -
Vivi423g00007 346 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Vivi423g00007 346 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Vivi423g00007 346 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 285 IPR031127 GO:0004842|GO:0016567
Vivi423g00007 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Vivi423g00007 346 SUPERFAMILY RING/U-box 86 167 - -
Vivi423g00007 346 Gene3D - 215 319 - -
Vivi423g00007 346 SMART ibrneu5 156 218 IPR002867 GO:0008270
Vivi423g00007 346 SMART ibrneu5 228 290 IPR002867 GO:0008270
Vivi423g00007 346 CDD BRcat_RBR_unk 169 221 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00007 88 278 C3H Transcription Factor Family AT2G19610 28.856 1.69e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00007 K11975 - gmx:100803898 327.02