Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00004 ATGAATAATTTCCCCAAACTTTTGAATTCTCATAGACTACTGCTTCCGAAACTCTCCCCACCAGAGGTAATCGACCTCGACTCTTTCCGCTCATACGGCAAGCAAACCATCTCTGCAACCATCTCTGCCGTCATCGACCTTTCTGACGAAGAAGACTACATTAAGATGCTCGATTTCATTCCTAAGCACACTCCTTTAAGGAAACGTAAGAGAAATTTCGGGAAAGGGCAATCCTCAAGTTCATGTAACACTCCATTCGTCTGCGAAATCTGCTCGAAAACTAAAACAATGAAGGAAGCTTTCTACATCAGCGGCTGCTCTCACGCGTTTTGCTCTGATTGCGTCGCAAATTACATCGCTTCCAAACTTGAAAATAACATTGTTGACATCTCATGTCCAGTTCCCCAATGTAAGGCTTCTTTAGAAGCGCAGTTTTGCCGGACGATTCTTCCAGCCGAGGTTTTTGAAAAGTGGAGTAAAGAGGCTGCTTCCCAAAAATTCTACTGTCCCTTTGCAGACTGTTCTGCTCTTTTGATCGATGATAAAACGGAGGCTGTTAGAAATTCAGAATGCCCTAATTGTAATAGGATGTTCTGTGCGCAATGTAAGGTTCCTTGGCACGATGGAATTGAATGTAGTGAGTTCCAGAAGCTGAACGTGGGCGAGAGGGAGAAAGAAGATATTATGTTGATGCGCCTTGCACAGAAAATGCACTGGAGGCGATGCCCTAATTGCAAAATTTATGTGGACAAAGACTGCGGCGGCTGCGATGCCATGACATGCAGGTGTCTCTGTCAATTTTGTTACAATTGTGGACTTGCCTACACTGATAGAGGCTGCAATTGTTGGAAACTCAATAGGACTCCACAACAACATCCACAGGTTTTTTCTGGAAGAACTCTCACCAGAACTATCACTAATAGGAATCTCATCTATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT 1017 0.4297 MNNFPKLLNSHRLLLPKLSPPEVIDLDSFRSYGKQTISATISAVIDLSDEEDYIKMLDFIPKHTPLRKRKRNFGKGQSSSSCNTPFVCEICSKTKTMKEAFYISGCSHAFCSDCVANYIASKLENNIVDISCPVPQCKASLEAQFCRTILPAEVFEKWSKEAASQKFYCPFADCSALLIDDKTEAVRNSECPNCNRMFCAQCKVPWHDGIECSEFQKLNVGEREKEDIMLMRLAQKMHWRRCPNCKIYVDKDCGGCDAMTCRCLCQFCYNCGLAYTDRGCNCWKLNRTPQQHPQVFSGRTLTRTITNRNLIYDDDDDDDDDDDDDDDDDDDDDDDDDDD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00004 339 MobiDBLite consensus disorder prediction 312 339 - -
Vivi423g00004 339 ProSiteProfiles TRIAD supradomain profile. 84 286 IPR044066 -
Vivi423g00004 339 CDD Rcat_RBR_unk 238 272 - -
Vivi423g00004 339 SUPERFAMILY RING/U-box 223 282 - -
Vivi423g00004 339 Pfam IBR domain, a half RING-finger domain 161 212 IPR002867 GO:0008270
Vivi423g00004 339 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Vivi423g00004 339 MobiDBLite consensus disorder prediction 311 339 - -
Vivi423g00004 339 CDD BRcat_RBR_unk 163 215 - -
Vivi423g00004 339 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Vivi423g00004 339 SUPERFAMILY RING/U-box 163 217 - -
Vivi423g00004 339 ProSiteProfiles Zinc finger RING-type profile. 88 136 IPR001841 -
Vivi423g00004 339 SMART ibrneu5 222 282 IPR002867 GO:0008270
Vivi423g00004 339 SMART ibrneu5 153 212 IPR002867 GO:0008270
Vivi423g00004 339 Gene3D - 214 332 - -
Vivi423g00004 339 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 294 IPR031127 GO:0004842|GO:0016567
Vivi423g00004 339 SUPERFAMILY RING/U-box 84 170 - -
Vivi423g00004 339 Gene3D - 168 213 - -
Vivi423g00004 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 167 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00004 88 272 C3H Transcription Factor Family AT2G19610 31.527 6.64e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00004 K11975 - cit:102613446 285.419