Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00002 ATGAAAACGACAACAACGACCACATCAACGACCGTCGTTCCCCCATCAACGACAGAAGTTATCGACGTCGAATCATTTCATCTCCCTCCGACCACCACCACACCCTCCGCCCCCGTCGTCATCGACCTTTCCGACGGTGAAGACGATGACGAAGTCAGAATTCTCAATTTCGTCCCCAAATTCAATCCTGTGCGAAAACGACAAAGGATCAACGTCGAAAAAGGCGAGTCTTCTTCGGCTCATGCTAACACAAACGTCGTGCCGTTTATCTGCGAAATTTGCACGGAGACGAAAACCGCGAACGATGCTTTCTTCATCAGCGGTTGTTATCATGCTTACTGTTCGGATTGCGTCGCTTTGTACGTCAGTTCGAAGCTGGAAGATAATGTGATCAACGTCAGGTGTCCTGTTTCTGGTTGCAGTGGTTTGTTGGAAGCTGAGGATTGTCGTTCGATTCTTCCGGTCGAGGTTTTTGATCGGTGGGGGAAGGCGGCGTGCGAGGCCTTGTTTGATGTATCGGAGAAATTCTATTGTCCGTATGCGGATTGTTCTGCTCTGTTGATCAATGATGGGACGGAGGCTGTGAAGCATTCGGAGTGTCCGAATTGTAGGAAGATGTTTTGTGCTCAATGTAAGGTTCCGTGGCATGATGGGATTGAGTGTAGCGAGTTTCAGAAGCTGAATGCGGATGAGAGAGGGAAGGATGATGTTATGCTGATGCGGCTCGCGAAGGATATGAACTGGAGGAGATGCCCTAATTGTAGGTTTTATGTCGCGAAATCGGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAGCTCGTCACCAAAATCGTAGCAGCCACTTTTGCACCAACTGTAAACGCTGA 891 0.4882 MKTTTTTTSTTVVPPSTTEVIDVESFHLPPTTTTPSAPVVIDLSDGEDDDEVRILNFVPKFNPVRKRQRINVEKGESSSAHANTNVVPFICEICTETKTANDAFFISGCYHAYCSDCVALYVSSKLEDNVINVRCPVSGCSGLLEAEDCRSILPVEVFDRWGKAACEALFDVSEKFYCPYADCSALLINDGTEAVKHSECPNCRKMFCAQCKVPWHDGIECSEFQKLNADERGKDDVMLMRLAKDMNWRRCPNCRFYVAKSEGCLYMKCRCGIAFCYNCGARHQNRSSHFCTNCKR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00002 296 SMART ring_2 91 138 IPR001841 -
Vivi423g00002 296 Pfam Zinc finger, C3HC4 type (RING finger) 91 136 IPR018957 GO:0046872
Vivi423g00002 296 SMART ibrneu5 231 294 IPR002867 GO:0008270
Vivi423g00002 296 SMART ibrneu5 159 221 IPR002867 GO:0008270
Vivi423g00002 296 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Vivi423g00002 296 SUPERFAMILY RING/U-box 168 226 - -
Vivi423g00002 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
Vivi423g00002 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 295 IPR031127 GO:0004842|GO:0016567
Vivi423g00002 296 SUPERFAMILY RING/U-box 89 172 - -
Vivi423g00002 296 Gene3D - 217 296 - -
Vivi423g00002 296 FunFam RBR-type E3 ubiquitin transferase 223 296 - -
Vivi423g00002 296 SUPERFAMILY RING/U-box 232 295 - -
Vivi423g00002 296 CDD BRcat_RBR_unk 172 224 - -
Vivi423g00002 296 Pfam IBR domain, a half RING-finger domain 174 221 IPR002867 GO:0008270
Vivi423g00002 296 ProSiteProfiles TRIAD supradomain profile. 87 296 IPR044066 -
Vivi423g00002 296 FunFam RBR-type E3 ubiquitin transferase 87 172 - -
Vivi423g00002 296 CDD Rcat_RBR_unk 247 282 - -
Vivi423g00002 296 ProSiteProfiles Zinc finger RING-type profile. 91 137 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00002 91 281 C3H Transcription Factor Family AT2G19610 32.338 8.62e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00002 K11975 - gmx:100807821 355.525