Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi423g00001 ATGTTATGTTATCTTATGCTATACTACCCATCATCATCCTTTCAAAAGTTATTATCGAATCATGTGTGCGTGAAATTCAAACTTTTATTTTATAATTTAATTCCAACAATAACAAAACTTTATCATTCTATTTTCCCTTTCTGGTTTACTGTTTTGTCAAAAAGGTTAATAATCAATAATCAAATCACAATCGGTGTGTCAAGACATTGTAGTCTTCTTGCTGTTCTGGGTAGTGAGTTACATGACAGTAAACAGAAGCAGAAGCAGGGTACTGTTTCTGAGGATCGATTTTCGGCGTACCCCTTTCCGGAGCTTTCTTCGTCCGGGCGGCTCGAGGTTAAAGTATTGAGAAAACCTAGTTTCGATGAACTCGCTCGAGTTTTTGAGCAACTGCAACCGGATTTTGTTTACCTGCAAGGTCAGCGGCTAGATGATAGGGGGGAAGTTGGGTCTCTTGTGTGGGAAGATTTTGACCTTTCTTCCCCGGAAGCTTTGTGTCGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCAAAGGGCGAAAAGTTGGCAGAGACGCTACATTCCAAGGGAGTTCCTTACACTATATACTGGAAAAATGAATTTTCAAACTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAGAGTACTTCCAGTCATACATGGGATGCTTTCCAACTTGCTCAGGCATCTTTTAGACTTTACTGCGAGCAAAACAATGCCGCTCCCAACAGTCGGAAAGGCGGTGATAAGCTTGGGCCACAAATTCTTGGGGAACCTCCTACCATTGAAGTTAGTCCATGTGAAATAGACACGAAGGAAGAAGAAGAAGAAGATTCACAAGAGTCTAGTTCTTCTATAAGGATATATGATAATGATGTGAATACAAGATTTCTTGTTTGTGGATTTCCCTGCACATTGGATGCGTCTTTATTGGGGTCGTTAGAGGATGGACTCAATGCTCTCCTATGTACCGAAATACGTGGATGTAAACTTCAAAGTCGGACAAGTGCCCCACCACCACCTCTCCAAGCAGGAACATTCTCTCGTGGCGTGGTGACCATGCGTTGTGAAATATCCACATGCAGCTCTGCTCATATATCACTTCTAGTGTCCGGTAGTGCAGATGCTTGTTTCAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAACTCACCGAGAATAGTCAACTTGTCCAGGCAATTCCTGGTCACGAACAAAAGAAATTACCTTCATATGAACCTCGAAGATCAGCCTCAGTTGCGTGTGGATCTTCTGTGTTTGAAGTTTCTATGCGAGTTCCTACATGGGCTTCGCAGGTTCTGAGACAACTTGCATCAAATATGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGACTGCCCGTTGCATCCTTTACTAAAGATGATTCAGAGCGTCTTCTTTTCTTTTGTAATCAGCGAGAGAAAGACAACTACTCCAAAGACATCATTGTCTCGGGTCATCCTAGTTGGTTGGTGCCTCCCGCACCTAGTCGAAAAAGATCTGAACCAGGCTCTAGTTTTAAAACTATTAATGCTAGCGGCATGGAAGTTGAAGATATTTGCAGCGTTAGACAAAAATTAAGTTTTGCTGCAATGAGGCCAATCCCTCAGTCTCATCGTCAAAAGGTTCTCCCTTTTTCTGGATTTTCTGAGGGAGAAAGATACGATGGTGACCATGGAAAATCAAATCAGCTTCTTGTTCCAATTAAGCATAATGGTTTAGGTCTTCATTCAGCCACAAACAGAAAGTCCGTGTCAAACTCGTTTCAAGCTCACCAGATAATTTCTTTGAATCCAATACCGATGAAAAAACATGGTTGCGACAGAGCTCCAATACGAGCTTGCTCAGAGGAAGAATTCCTGAAAGACGTAATGCAATTTCTAGTCCTTCGAGGGCATACTCGCCTCATTCCACAAGGCGGGTTTGCTGAGTTTCCTGATGCCGTTCTGAATGCTAAACGCCTTGACCTTTTCAACTTGTACAGAGAGGTTGTTTCAAGAGGAGGCTTTCACGTCGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTAACTCACAGAATGACAGGTGTTGGCAATACACTCAAGAGACATTACGAAACATATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAATTGTGGTATGTGTGGTGAATGGGCTCATTTTGGCTGTGATCGGCGGCAGGGGCTAGGAGCATTTAAGGACTACGCCAAAACTGACGGGCTCGAGTACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAAACGCCAAAAACTACAAATGGTTATTAA 2436 0.4204 MLCYLMLYYPSSSFQKLLSNHVCVKFKLLFYNLIPTITKLYHSIFPFWFTVLSKRLIINNQITIGVSRHCSLLAVLGSELHDSKQKQKQGTVSEDRFSAYPFPELSSSGRLEVKVLRKPSFDELARVFEQLQPDFVYLQGQRLDDRGEVGSLVWEDFDLSSPEALCRLFSSKLPNTVYLETPKGEKLAETLHSKGVPYTIYWKNEFSNYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCEQNNAAPNSRKGGDKLGPQILGEPPTIEVSPCEIDTKEEEEEDSQESSSSIRIYDNDVNTRFLVCGFPCTLDASLLGSLEDGLNALLCTEIRGCKLQSRTSAPPPPLQAGTFSRGVVTMRCEISTCSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPGHEQKKLPSYEPRRSASVACGSSVFEVSMRVPTWASQVLRQLASNMSYRCLVMLGVASIQGLPVASFTKDDSERLLFFCNQREKDNYSKDIIVSGHPSWLVPPAPSRKRSEPGSSFKTINASGMEVEDICSVRQKLSFAAMRPIPQSHRQKVLPFSGFSEGERYDGDHGKSNQLLVPIKHNGLGLHSATNRKSVSNSFQAHQIISLNPIPMKKHGCDRAPIRACSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGMCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKTPKTTNGY 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi423g00001 811 ProSiteProfiles ARID domain profile. 634 738 IPR001606 GO:0003677
Vivi423g00001 811 SMART bright_3 635 739 IPR001606 GO:0003677
Vivi423g00001 811 Gene3D - 631 734 IPR036431 GO:0003677
Vivi423g00001 811 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 67 811 IPR042293 -
Vivi423g00001 811 SUPERFAMILY FYVE/PHD zinc finger 737 801 IPR011011 -
Vivi423g00001 811 MobiDBLite consensus disorder prediction 252 294 - -
Vivi423g00001 811 Pfam ARID/BRIGHT DNA binding domain 637 734 IPR001606 GO:0003677
Vivi423g00001 811 CDD PHD_ARID4_like 744 795 - -
Vivi423g00001 811 CDD ARID 636 734 - -
Vivi423g00001 811 SUPERFAMILY ARID-like 635 749 IPR036431 GO:0003677
Vivi423g00001 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 803 IPR013083 -
Vivi423g00001 811 SMART ARID_2 631 734 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi423g00001 65 810 ARID Transcription Factor Family AT3G43240 63.782 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi423g00001 ARID 8.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi423g00001 - - vvo:131631108 1649.03