Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi421g00005 ATGTACCCTCAACCACACTACCAATCTCAACCCTTCAATTCACAAGAACAACAACAACAACCCTACTATTCAGATTCTTCGCTTCATCCTCCCGGAACTAACCCAATTGCAAATTCAACACCTTTTTCTGCTTACGCCTCCCAAACAGCAGATTATCAGAATTGGGTCGCTCAACCATCTGAACCCATCGGTTACGATCTCGGGGGCAATGCTGGTGGTTCAGCATACGAGACTTCTGCGTGGAATGCTACTTGGCCACACCAAATTTATGGTAATGAGACTACATCAATGTTGCCTAACCGATCCAAATTCACCCAAGCGTTGAGGTGTGAAGTGTGTAAAATTGATGTCAATAGCAAAGATTCATATGAAAAACACGTAGCTGGAAAGAAACACCAGAAGAATTTACAAAGTGGCGCAAGCATCCAAGGACAGGCGTTAATCGGTCCTGTAGTCCAGCAATCAGCGATTAAGAAACAGGTGGAACAGTCAAAGATTTGCACAACTTGCAATGTTTTGTGCACATGTCACGACACATATATCAAACATATTGCTGGGAAAAAGCACACAGCTCAGGTTTGCTTGATGTCTAATGGTGGCATTGGTCCATCTATTGCCGAATTCAAGCGTATTGGAGTTCCTCCGTTTCAAAAAGCTGCTAAGAGACTCAAGGTTGCTCAATCTGCATGGTGTGAAACTTGTAAGATTAATTGTAACAGCAGGGATATGTACATTACACATTTAGCCGGAAAAAAACACTTGAAGAACTTGGAAAAACTGTCGAATCCGAAAATCGAAGTTGGCACAAGCGCCACTGCCACTGCGACAATTACTATAATCGGACCACAGGAAAAGCCAGGTACTGATAATCCAAAAGCAAGGAAGGCATCGGAACTTGCTATCGAGTCAAAGAAACGTAAAATTGTAGAAGGAGGAACTGCGGTTAATAATGTTAAAACGTGTACTTTATGCAATGTGGTGTGTAATAGCGAGATAGTTTTCAATTTGCACCTTATTGGCCAGAAACATGCTGCTATGGTGAAGAAAGCAGGATCAAGCACTGGTTGA 1068 0.4251 MYPQPHYQSQPFNSQEQQQQPYYSDSSLHPPGTNPIANSTPFSAYASQTADYQNWVAQPSEPIGYDLGGNAGGSAYETSAWNATWPHQIYGNETTSMLPNRSKFTQALRCEVCKIDVNSKDSYEKHVAGKKHQKNLQSGASIQGQALIGPVVQQSAIKKQVEQSKICTTCNVLCTCHDTYIKHIAGKKHTAQVCLMSNGGIGPSIAEFKRIGVPPFQKAAKRLKVAQSAWCETCKINCNSRDMYITHLAGKKHLKNLEKLSNPKIEVGTSATATATITIIGPQEKPGTDNPKARKASELAIESKKRKIVEGGTAVNNVKTCTLCNVVCNSEIVFNLHLIGQKHAAMVKKAGSSTG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi421g00005 355 PANTHER ZINC FINGER RNA-BINDING PROTEIN 156 269 - -
Vivi421g00005 355 SUPERFAMILY beta-beta-alpha zinc fingers 87 137 IPR036236 -
Vivi421g00005 355 SMART ZnF_U1_5 316 350 IPR003604 GO:0003676|GO:0008270
Vivi421g00005 355 SMART ZnF_U1_5 162 196 IPR003604 GO:0003676|GO:0008270
Vivi421g00005 355 SMART ZnF_U1_5 105 139 IPR003604 GO:0003676|GO:0008270
Vivi421g00005 355 SMART ZnF_U1_5 226 260 IPR003604 GO:0003676|GO:0008270
Vivi421g00005 355 SUPERFAMILY beta-beta-alpha zinc fingers 314 349 IPR036236 -
Vivi421g00005 355 SUPERFAMILY beta-beta-alpha zinc fingers 226 260 IPR036236 -
Vivi421g00005 355 Pfam Zinc-finger of C2H2 type 109 132 - -
Vivi421g00005 355 Pfam Zinc-finger of C2H2 type 166 189 - -
Vivi421g00005 355 Pfam Zinc-finger of C2H2 type 230 253 - -
Vivi421g00005 355 Pfam Zinc-finger of C2H2 type 320 343 - -
Vivi421g00005 355 MobiDBLite consensus disorder prediction 1 41 - -
Vivi421g00005 355 Gene3D Classic Zinc Finger 300 350 - -
Vivi421g00005 355 Gene3D Classic Zinc Finger 216 260 - -
Vivi421g00005 355 Gene3D Classic Zinc Finger 92 138 - -
Vivi421g00005 355 Gene3D Classic Zinc Finger 152 195 - -
Vivi421g00005 355 SUPERFAMILY beta-beta-alpha zinc fingers 158 193 IPR036236 -
Vivi421g00005 355 SMART c2h2final6 319 343 IPR013087 -
Vivi421g00005 355 SMART c2h2final6 165 189 IPR013087 -
Vivi421g00005 355 SMART c2h2final6 108 132 IPR013087 -
Vivi421g00005 355 SMART c2h2final6 229 253 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi421g00005 162 350 C2H2 Transcription Factor Family AT5G61190 28.042 3.60e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi421g00005 - - vvo:131595247 551.977