Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi420g00007 ATGGGGTTAGGTGGTGAGAATGCTAAGGTGGTAGTAGAGTCTTTGGATGTGTGTAAATCAAAAGGGAGAAAGAAGAAGAAGAAGCAAGATGGGGTAGTGGAAGATGAGGAGACTGAAACTGGGTGTTGGCTTAGCTTTAGGTTCATTGGGAGCTGCATTTCGACAAGATCCAAAGTTGATAGCTCTGTTAGTGGCGCAAGTACTAACTATGCTGAAAGCAAATCAACTATTGATACAAGTAGAGACCAGCCATCGGTTCCAGTAGTCTCTTCGACAACCACTACTACTAGTAATGCTGAAAGCAACTCATCTACTTCAAAACTTGAAGAGGAGCTTAAAGTTGCATCCAGGCTTCGGAAATTCTCTTTCAACGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGCGTGTTCAAAGGATGGATTGAAGAAAATGGAACTGCTGCAGTAAAACCTGGCACGGGACTTACCGTTGCTGTCAAAACCCTTAACCACGATGGTCTACAAGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTCGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATCGAAGATGATCAAAGGTTGCTAGTTTACGAGTTTATGCCTCGTGGAAGCCTGGAAAACCACTTGTTTAGGAGAGCCCTGCCTCTTCCGTGGTCCATTAGGATGAAAATCGCACTCGGAGCTGCAAAGGGACTCGCTTTTCTTCACGAGGAAGCTGAACGACCTGTAATATATAGGGATTTCAAAACCTCCAATATATTATTGGATGCAGAGTACAATGCCAAGCTCTCCGACTTTGGACTCGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTTATGGGAACTTATGGTTATGCCGCACCAGAATATGTCATGACAGGGCATCTTACATCAAGAAGCGATGTGTATAGTTTTGGAGTTGTACTACTTGAGATGATAACCGGGCGAAGATCCATGGACAAAAACCGACCGAATGGCGAACATAACCTCGTGGAATGGGCAAGACCGCATCTAGGAGAAAGACGAAGATTCTACAGATTGATTGACCCTCGGCTGGAAGGTCACTTCTCAATAAAAGGAGCTCAAAAAGCCGCCCATTTAGCTGCTCACTGTCTTAGCCGAGATCCAAAAGCAAGACCACTAATGAGCGAAGTTGTAGAAGCATTGAAGCCTCTCCCAAACCTAAAGGACATGGCTAGTTCATCATACTATTTCCAGACGATGCAAGCCGACCGTTTTAGTGCGAGTCCGAATACTCGAAACGGTAGACAAGGAGCGTTCACGAGGAACGGACAACAACAAAGGAGCCTTTCCATATCACATGGCACTCACGCCTCTCCATTTCACCATCAATATCCTCAACACTCACCAAAACCAACCGGAAAGGCGCAAAGTTGA 1470 0.4483 MGLGGENAKVVVESLDVCKSKGRKKKKKQDGVVEDEETETGCWLSFRFIGSCISTRSKVDSSVSGASTNYAESKSTIDTSRDQPSVPVVSSTTTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRALPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRQGAFTRNGQQQRSLSISHGTHASPFHHQYPQHSPKPTGKAQS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi420g00007 489 MobiDBLite consensus disorder prediction 59 106 - -
Vivi420g00007 489 Pfam Protein tyrosine and serine/threonine kinase 137 413 IPR001245 GO:0004672|GO:0006468
Vivi420g00007 489 Gene3D Transferase(Phosphotransferase) domain 1 219 435 - -
Vivi420g00007 489 MobiDBLite consensus disorder prediction 438 474 - -
Vivi420g00007 489 MobiDBLite consensus disorder prediction 438 489 - -
Vivi420g00007 489 SUPERFAMILY Protein kinase-like (PK-like) 111 413 IPR011009 -
Vivi420g00007 489 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Vivi420g00007 489 PANTHER OS01G0588500 PROTEIN-RELATED 96 416 - -
Vivi420g00007 489 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi420g00007 489 FunFam Serine/threonine-protein kinase BIK1 100 218 - -
Vivi420g00007 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vivi420g00007 489 CDD STKc_IRAK 139 416 - -
Vivi420g00007 489 MobiDBLite consensus disorder prediction 59 105 - -
Vivi420g00007 489 FunFam Probable serine/threonine-protein kinase PBL8 219 434 - -
Vivi420g00007 489 Gene3D Phosphorylase Kinase; domain 1 107 218 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi420g00007 102 413 Glycoside Hydrolase AT3G07070 56.782 1.13e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi420g00007 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi420g00007 - - gmx:100787127 871.307