Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00101 ATGGAGGATCAAGCTTTATTAGGTTATGAACCATTTGTTAATGTTGGAAGAGATGAGGAGGAAGAAGATGAGTTTTGCAGCTGTTGTGAAGATGAAGAAGAAGAAAGAGAACAACAGCAACAAGGAGAAGAAGAATGGAAGGAAACTGAGGAGACAGTGGTGGAAGGATTGAAGGAAGAGCTTGATGAATTTTCAGTAAGAATGTACTTTAAGGGTTTGTCAATAACTGGGGTTGAGAATTCAACTACAGGGTTTTCTGGAATTGGAGTGTTTATGGAAAGATCATCAAAGTTTTCTCCTATAAGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGCCTATGGTTGATTACTTGGCACTCATGGATGGTTTGTTGGAAGCTTTGCACAACAAGATCCGTAGGGTTTTTGCTTTCACAGATTCTGAATTGTTGTATAAGACAACATTGGAGGAAAATTTGGACATGCCACTTTTGATGGCACTGAAAGAAAGGATTCTGGAACATGCAGATAATTTTGAAACTTTTGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTACAGTTAGCCAAAGTAGCTATGGGACTTGTCACTTTTCCAGTAAACGAAAAAACATCACTTGAGAATTGTTCTATTTGTTGCGATGACAAGCCAGTGCCAATGATGATTACCTTGAAATGTTCACACACGTTCTGTTCACATTGCTTGAGGTCCTATGCAGATGGTAAACTGCAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCAGGATGCAGATATTGCATCTCGGCACCCGAATGCAAGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAAGCCCTTTCAGAAGCAAATATCGGTCAGTCAGAAAGGTTTTATTGTCCGTTTCCGAATTGCTCAGTTCTCCTCGATCCTTGCGAGTGTTTGTCGGCAATGGACGGTTCATCTAGTCAGTCAGACAATTCTTGTATTGAGTGTCCTGTTTGTCAGAGGTTTATTTGTGTGGATTGCGGTGTTCCTTGGCATTCTTCCATGAGCTGTGAAGAATACCAGCATTTGCCAGAGGGGGAGAGAGATGCTTCTGACATTAGCTTGCATCGTCTTGCACAGAATAAAAGGTGGAAGCGTTGTCAACAGTGTCGTAGAATGATTGAGCTTGCTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAATTTTGCTATTCTTGTGGCGCGGAATACAGGAATGGCCAACAAACATGTCAATGTGCATTTTGGGATGAAGACAGCTTGACAAACTCCCTTCAAGAATCAGAACAATGGGCATGGGAGACTTCTATGATCATGGATGCATACTCAGATCAAGAACGGTCACAACTCGCACTTATACAACGGTTCCTTGATGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCCTTGAAGGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATAA 1593 0.4225 MEDQALLGYEPFVNVGRDEEEEDEFCSCCEDEEEEREQQQQGEEEWKETEETVVEGLKEELDEFSVRMYFKGLSITGVENSTTGFSGIGVFMERSSKFSPIRVQKRLDFYAEEPMVDYLALMDGLLEALHNKIRRVFAFTDSELLYKTTLEENLDMPLLMALKERILEHADNFETFDLKLIPSIDLEQPLQLAKVAMGLVTFPVNEKTSLENCSICCDDKPVPMMITLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISAPECKSFLPFTSFESLEKALSEANIGQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVPWHSSMSCEEYQHLPEGERDASDISLHRLAQNKRWKRCQQCRRMIELAQGCYHMTCWCGHEFCYSCGAEYRNGQQTCQCAFWDEDSLTNSLQESEQWAWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPPPPPPPPPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00101 530 Gene3D - 66 199 IPR036397 GO:0003676
Vivi41g00101 530 Pfam IBR domain, a half RING-finger domain 286 352 IPR002867 GO:0008270
Vivi41g00101 530 Pfam IBR domain, a half RING-finger domain 372 421 IPR002867 GO:0008270
Vivi41g00101 530 MobiDBLite consensus disorder prediction 16 49 - -
Vivi41g00101 530 Coils Coil 29 49 - -
Vivi41g00101 530 CDD BRcat_RBR_unk 294 355 - -
Vivi41g00101 530 MobiDBLite consensus disorder prediction 16 39 - -
Vivi41g00101 530 FunFam RBR-type E3 ubiquitin transferase 350 465 - -
Vivi41g00101 530 Pfam Reverse transcriptase-like 83 182 IPR002156 GO:0003676|GO:0004523
Vivi41g00101 530 SUPERFAMILY RING/U-box 365 429 - -
Vivi41g00101 530 MobiDBLite consensus disorder prediction 478 498 - -
Vivi41g00101 530 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Vivi41g00101 530 CDD Rcat_RBR_unk 378 414 - -
Vivi41g00101 530 FunFam RBR-type E3 ubiquitin transferase 66 200 - -
Vivi41g00101 530 Gene3D - 349 466 - -
Vivi41g00101 530 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 464 IPR031127 GO:0004842|GO:0016567
Vivi41g00101 530 ProSiteProfiles Zinc finger RING-type profile. 213 257 IPR001841 -
Vivi41g00101 530 FunFam RBR-type E3 ubiquitin transferase 208 293 - -
Vivi41g00101 530 MobiDBLite consensus disorder prediction 474 500 - -
Vivi41g00101 530 ProSiteProfiles TRIAD supradomain profile. 209 427 IPR044066 -
Vivi41g00101 530 SUPERFAMILY RING/U-box 209 289 - -
Vivi41g00101 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 293 IPR013083 -
Vivi41g00101 530 SMART ibrneu5 280 352 IPR002867 GO:0008270
Vivi41g00101 530 SMART ibrneu5 362 421 IPR002867 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00101 65 412 C3H Transcription Factor Family AT2G19610 26.446 2.63e-29 118