Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00099 ATGGAAGCCGGTGACGGTTACAGTGGACGAGGAACTCAGCAACCGTCCGACGAGGTGAGTCTACAACCAGAATGGAGACGCCGAACTGCCTCAACCGGAAGAGAACAACAAAACCTTACTCTCCAACCAGAATGGAGGCGAGGTAGGTCAACAGCAACAGCTCTTCCTTCTTCCTCCCGTGCCGGCGATGAAGCTCAGAAGAAGGACGAGGAGCAGAAAAAGGAGGCTATACATCAACCAGAATGGAGACGATCAAGGTCCACTACTACTACTGCCACTGCATATCCATGGAATCAAAACCAACATTATGGTGTGAGAAAACCATTAGGACTAGGATCAAGTTCTAGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCTTGGCGAAATGCTCCACCGTCAGATTATGTTGTTCCTAAACTGGAAAGTCTACGAATATCGAAAGATTTAGCTGCATCATCTTTTTCGCTTAAGGATAAAGCTTTACCTATTCGGAGACCTGACGGTGGTGGCACGTTAGCGGTTCTTACGAGCAGACTTTGTGTTAATCATTTCCTTTTTAAGTTCAATCCGGAGAGTATAATATTTCATTACAATGTTAATGTGAAACCTAATTTTTCGTCAAAAGTTGGCCAGCCTCGGAAGTTGTCTAATAATGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCCGAGAGGTTTCCGTTGGACATGACTGCGCATGACGGTGCCAAGAATATCTTTAGTGCGGTGGAGTTACCGGAAGAGACTGTTAATGTGGTGATCTTTGATGGTGAGGATGAAAAGATCACTTCATATAGTGTTACCTTAACACTTCTTAATAAACTCAGACTTCGCAAGTTAATGGACTATCTTTGTGGGCATTCAGTCTCTCTTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCTGCTAGGCGTACAATTTCTGTGGGACGCCACTTCTATCCCACGAATCCTCCTTTAGTAATGAAGGAACTTCGCCCTGGAATAATTGCAGTTGGGGGGTTTCAGCATAGTTTAAAACCTACTTCTCAGGGTTTGTCCTTGTGTGTAGACTACTCGGTGGTGCCTTTCCGAAAACAAATGTCAGTCTTGGATTTCTTGCACGAGCGTATCAATGACTTTAACTTGGGTGAATTTGAAAATTTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGGAAATCCAAACAGAAATATATTATTGCCGGATTAACACCTACAGTTACAAGGCATGTCACTTTCCCCATTGACTATACTAAGGGCTGGAAAATTGAAAAGGATGTTAATCTTCTTAGCTTTTTTAATGAGAAATATGACAAGGATATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAGGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATGGTGCTTCAGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCGAGCGAAAGGCAAAGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGTGGTGATATTATTCGGAACTTTGGAATGTCAGTCAATACAACCATGACAACCATTCTAGGACGTGTAATTGGACCCCCGGAATTGAAGTTGGGCGATCCAAATGGCAAGACTGTCAAGATTACAGTCGATCTAGATAAATGTCATTGGAACCTTACAGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCGTTGGGCCATTCTTGATTTCACCAGTATCGGGCCGTATAATAAGAAATTAAGAAGAAAGGAATTTGTCGAAAAACTTATTGGTAAATACAAGAAGTTGGGTATCTATATGCAGGATCCCATTTGGTACGAAGAATCTTCAATGAAGATACTTGCGAGTCATGAATTGCTATCTGAATTACTTGAAAAAATCAAAAACATTTGTGAATATAACCAAGGTCGACTACAATTTCTTCTGTGTGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAATCACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGGATGATAAATTCTATTCTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGCAATGTAGAGCTCAATAATAGGCTCCCTTACTTTGACGGGGACGAACATGTTATGTTTATAGGCGCTGATGTCAATCACCCTGGTTTACGGGACAACAGGAGTCCGTCAATTGTTGCTGTGGTTGCAACCATTAATTGGCCAGCCGCTAATCGCTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGGTTTGTGTTGAGCTTGTCAGTTGTTATTGGAGGATGAACGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGCGAGTACCAGTTTGACATGGTTCTTAATGAAGAACTACTAGATTTGAAGAGTGCATTCCGAAGATTAAATTATCTCCCTACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTCTTTCCAGATGGTTGGAGGGATGGGTCTTCCGGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCTTTTGAGTTTGATTTTTACCTCTGTAGTTACTATGGAAGCCTAGGTTCAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAAAAACTTATATATGAGATGTGCTTTACCTTTGCAAGGTGCACAAAACCCGTGTCTTTAGTCCCACCTGTGTATTATGCCGACCTTGCTGCTTATAGAGGACGATTGTACCACGAAGCAAGGATTGGGATGCAATCTAAGAAGTCAAGAGGATCTTTATCTTCTAAAGATGCATTTGAACAGGGATTTTACAGGTTGCACGCTGACCTGGAAAACATAATGTTCTTCATCTGA 3042 0.4155 MEAGDGYSGRGTQQPSDEVSLQPEWRRRTASTGREQQNLTLQPEWRRGRSTATALPSSSRAGDEAQKKDEEQKKEAIHQPEWRRSRSTTTTATAYPWNQNQHYGVRKPLGLGSSSSGVQRSRNIDESWRNAPPSDYVVPKLESLRISKDLAASSFSLKDKALPIRRPDGGGTLAVLTSRLCVNHFLFKFNPESIIFHYNVNVKPNFSSKVGQPRKLSNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVELPEETVNVVIFDGEDEKITSYSVTLTLLNKLRLRKLMDYLCGHSVSLPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERINDFNLGEFENFRKYVEEVLIGLKVSVTHRKSKQKYIIAGLTPTVTRHVTFPIDYTKGWKIEKDVNLLSFFNEKYDKDIVYKDIPCLDLGKGNRKNYVPMEFCVLAEGQRYPKERLDGASAKTLEAMALAHPSERQSAIQKMVQSSDGPCGGDIIRNFGMSVNTTMTTILGRVIGPPELKLGDPNGKTVKITVDLDKCHWNLTGRSMVEGKPVERWAILDFTSIGPYNKKLRRKEFVEKLIGKYKKLGIYMQDPIWYEESSMKILASHELLSELLEKIKNICEYNQGRLQFLLCVMANKSPGYKYLKWISETKVGIITQCCLSYSANQGDDKFYSYLALKINAKLGGSNVELNNRLPYFDGDEHVMFIGADVNHPGLRDNRSPSIVAVVATINWPAANRYAARVCPQFNRSEKILNFGEVCVELVSCYWRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKSAFRRLNYLPTITLIVAQKRHQTRFFPDGWRDGSSGGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGSSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSKKSRGSLSSKDAFEQGFYRLHADLENIMFFI 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00099 1013 Gene3D - 746 1013 IPR036397 GO:0003676
Vivi41g00099 1013 MobiDBLite consensus disorder prediction 32 60 - -
Vivi41g00099 1013 MobiDBLite consensus disorder prediction 83 100 - -
Vivi41g00099 1013 CDD PAZ_argonaute_like 376 491 - -
Vivi41g00099 1013 Gene3D - 558 739 - -
Vivi41g00099 1013 ProSiteProfiles Piwi domain profile. 676 975 IPR003165 GO:0003676
Vivi41g00099 1013 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 179 976 - -
Vivi41g00099 1013 ProSiteProfiles PAZ domain profile. 376 492 IPR003100 GO:0005515
Vivi41g00099 1013 SMART DUF1785_2 322 375 IPR014811 -
Vivi41g00099 1013 SUPERFAMILY Ribonuclease H-like 661 975 IPR012337 -
Vivi41g00099 1013 SMART Piwi_a_2 676 974 IPR003165 GO:0003676
Vivi41g00099 1013 Pfam N-terminal domain of argonaute 179 313 IPR032474 -
Vivi41g00099 1013 MobiDBLite consensus disorder prediction 1 129 - -
Vivi41g00099 1013 CDD Piwi_ago-like 539 973 IPR045246 -
Vivi41g00099 1013 SMART PAZ_2_a_3 376 514 IPR003100 GO:0005515
Vivi41g00099 1013 MobiDBLite consensus disorder prediction 112 128 - -
Vivi41g00099 1013 Pfam Piwi domain 677 971 IPR003165 GO:0003676
Vivi41g00099 1013 Pfam PAZ domain 393 502 IPR003100 GO:0005515
Vivi41g00099 1013 SUPERFAMILY PAZ domain 371 530 IPR036085 GO:0005515
Vivi41g00099 1013 Gene3D paz domain 371 496 - -
Vivi41g00099 1013 Pfam Argonaute linker 1 domain 323 374 IPR014811 -
Vivi41g00099 1013 MobiDBLite consensus disorder prediction 62 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00099 182 990 Eukaryotic Initiation Factors Gene Family AT1G48410 34.426 2.28e-139 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00099 K11593 - gmx:100783571 1487.63