Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00098 ATGGAAGCCGGTGACGGTTACAGTGGACGAGGAACTCAGCAACCGTCCGACGAGGTGAGTCTACAACCAGAATGGAGACGCCGAACTGCCTCAACCGGAAGAGAACAACAAAACCTTACTCTCCAACCAGAATGGAGGCGAGGTAGGTCAACAGCAACAGCTCTTCCTTCTTCCTCCCGTGCCGGCGATGAAGCTCAGAAGAAGGACGAGGAGCAGAAAAAGGAGGCTATACATCAACCAGAATGGAGACGATCAAGGTCCACTACTACTACTGCCACTGCATATCCATGGAATCAAAACCAACATTATGGTGTGAGAAAACCATTAGGACTAGGATCAAGTTCTAGTGGTGTTCAAAGAAGTAGAAACATTGATGAATCTTGGCGAAATGCTCCACCGTCAGAAGATTATGTTGTTCCTAAACTGGAAAGTCTACGAATATCGAAAGATTTAGCTGCATCATCTTTTTCGCTTAAGGATAAAGCTTTACCTATTCGGAGACCTGACGGTGGTGGCACGTTAGCGGTTCTTACGAGCAGACTTTGTGTTAATCATTTCCTTTTTAAGTTCAATCCGGAGAGTATAATATTTCATTACAATGTTAATGTGAAACCTAATTTTTCGTCAAAAGTTGGCCAGCCTCGGAAGTTGTCTAATAATGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCCGAGAGGTTTCCGTTGGACATGACTGCGCATGACGGTGCCAAGAATATCTTTAGTGCGGTGGAGTTACCGGAAGAGACTGTTAATGTGGTGATCTTTGATGGTGAGGATGAAAAGATCACTTCATATAGTGTTACCTTAACACTTCTTAATAAACTCAGACTTCGCAAGTTAATGGACTATCTTTGTGGGCATTCAGTCTCTCTTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCTGCTAGGCGTACAATTTCTGTGGGACGCCACTTCTATCCCACGAATCCTCCTTTAGTAATGAAGGAACTTCGCCCTGGAATAATTGCAGTTGGGGGGTTTCAGCATAGTTTAAAACCTACTTCTCAGGGTTTGTCCTTGTGTGTAGACTACTCGGTGGTGCCTTTCCGAAAACAAATGTCAGTCTTGGATTTCTTGCACGAGCGTATCAATGACTTTAACTTGGGTGAATTTGAAAATTTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACTCACCGGAAATCCAAACAGAAATATATTATTGCCGGATTAACACCTACAGTTACAAGGCATGTCACTTTCCCCATTGACTATACTAAGGGCTGGAAAATTGAAAAGGATGTTAATCTTCTTAGCTTTTTTAATGAGAAATATGACAAGGATATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAGGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATGGTGCTTCAGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCGAGCGAAAGGCAAAGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGTGGTGATATTATTCGGAACTTTGGAATGTCAGTCAATACAACCATGACAACCATTCTAGGACGTGTAATTGGACCCCCGGAATTGAAGTTGGGCGATCCAAATGGCAAGACTGTCAAGATTACAGTCGATCTAGATAAATGTCATTGGAACCTTACAGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCGTTGGGCCATTCTTGATTTCACCAGTATCGGGCCGTATAATAAGAAATTAAGAAGAAAGGAATTTGTCGAAAAACTTATTGGTAAATACAAGAAGTTGGGTATCTATATGCAGGATCCCATTTGGTACGAAGAATCTTCAATGAAGATACTTGCGAGTCATGAATTGCTATCTGAATTACTTGAAAAAATCAAAAACATTTGTGAATATAACCAAGGTCGACTACAATTTCTTCTGTGTGTGATGGCTAATAAAAGTCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAATCACACAATGTTGTTTGTCTTATAGTGCTAATCAAGGGGATGATAAATTCTATTCTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGCAATGTAGAGCTCAATAATAGGCTCCCTTACTTTGACGGGGACGAACATGTTATGTTTATAGGCGCTGATGTCAATCACCCTGGTTTACGGGACAACAGGAGTCCGTCAATTGTTGCTGTGGTTGCAACCATTAATTGGCCAGCCGCTAATCGCTATGCAGCACGTGTTTGCCCGCAATTCAATCGAAGTGAGAAAATATTAAACTTTGGGGAGGTTTGTGTTGAGCTTGTCAGTTGTTATTGGAGGATGAACGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGCGAGTACCAGTTTGACATGGTTCTTAATGAAGAACTACTAGATTTGAAGAGTGCATTCCGAAGATTAAATTATCTCCCTACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTCTTTCCAGATGGTTGGAGGGATGGGTCTTCCGGTGGCAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCTTTTGAGTTTGATTTTTACCTCTGTAGTTACTATGGAAGCCTAGGTTCAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAAAAACTTATATATGAGATGTGCTTTACCTTTGCAAGGTGCACAAAACCCGTGTCTTTAGTCCCACCTGTGTATTATGCCGACCTTGCTGCTTATAGAGGACGATTGTACCACGAAGCAAGGATTGGGATGCAATCTAAGAAGTCAAGAGGATCTTTATCTTCTAAAGATGCATTTGAACAGGGATTTTACAGGTTGCACGCTGACCTGGAAAACATAATGTTCTTCATCTGA 3045 0.4154 MEAGDGYSGRGTQQPSDEVSLQPEWRRRTASTGREQQNLTLQPEWRRGRSTATALPSSSRAGDEAQKKDEEQKKEAIHQPEWRRSRSTTTTATAYPWNQNQHYGVRKPLGLGSSSSGVQRSRNIDESWRNAPPSEDYVVPKLESLRISKDLAASSFSLKDKALPIRRPDGGGTLAVLTSRLCVNHFLFKFNPESIIFHYNVNVKPNFSSKVGQPRKLSNNDLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVELPEETVNVVIFDGEDEKITSYSVTLTLLNKLRLRKLMDYLCGHSVSLPRDILQGMDVVVKENPARRTISVGRHFYPTNPPLVMKELRPGIIAVGGFQHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERINDFNLGEFENFRKYVEEVLIGLKVSVTHRKSKQKYIIAGLTPTVTRHVTFPIDYTKGWKIEKDVNLLSFFNEKYDKDIVYKDIPCLDLGKGNRKNYVPMEFCVLAEGQRYPKERLDGASAKTLEAMALAHPSERQSAIQKMVQSSDGPCGGDIIRNFGMSVNTTMTTILGRVIGPPELKLGDPNGKTVKITVDLDKCHWNLTGRSMVEGKPVERWAILDFTSIGPYNKKLRRKEFVEKLIGKYKKLGIYMQDPIWYEESSMKILASHELLSELLEKIKNICEYNQGRLQFLLCVMANKSPGYKYLKWISETKVGIITQCCLSYSANQGDDKFYSYLALKINAKLGGSNVELNNRLPYFDGDEHVMFIGADVNHPGLRDNRSPSIVAVVATINWPAANRYAARVCPQFNRSEKILNFGEVCVELVSCYWRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKSAFRRLNYLPTITLIVAQKRHQTRFFPDGWRDGSSGGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGSSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSKKSRGSLSSKDAFEQGFYRLHADLENIMFFI 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00098 1014 SUPERFAMILY Ribonuclease H-like 662 976 IPR012337 -
Vivi41g00098 1014 Pfam Piwi domain 678 972 IPR003165 GO:0003676
Vivi41g00098 1014 Gene3D - 559 740 - -
Vivi41g00098 1014 MobiDBLite consensus disorder prediction 32 60 - -
Vivi41g00098 1014 ProSiteProfiles PAZ domain profile. 377 493 IPR003100 GO:0005515
Vivi41g00098 1014 SMART PAZ_2_a_3 377 515 IPR003100 GO:0005515
Vivi41g00098 1014 MobiDBLite consensus disorder prediction 83 100 - -
Vivi41g00098 1014 CDD Piwi_ago-like 540 974 IPR045246 -
Vivi41g00098 1014 SMART Piwi_a_2 677 975 IPR003165 GO:0003676
Vivi41g00098 1014 Pfam PAZ domain 394 503 IPR003100 GO:0005515
Vivi41g00098 1014 ProSiteProfiles Piwi domain profile. 677 976 IPR003165 GO:0003676
Vivi41g00098 1014 MobiDBLite consensus disorder prediction 1 129 - -
Vivi41g00098 1014 CDD PAZ_argonaute_like 377 492 - -
Vivi41g00098 1014 SMART DUF1785_2 323 376 IPR014811 -
Vivi41g00098 1014 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 180 977 - -
Vivi41g00098 1014 Gene3D - 747 1014 IPR036397 GO:0003676
Vivi41g00098 1014 MobiDBLite consensus disorder prediction 112 128 - -
Vivi41g00098 1014 SUPERFAMILY PAZ domain 372 531 IPR036085 GO:0005515
Vivi41g00098 1014 Gene3D paz domain 372 497 - -
Vivi41g00098 1014 Pfam N-terminal domain of argonaute 180 314 IPR032474 -
Vivi41g00098 1014 MobiDBLite consensus disorder prediction 62 82 - -
Vivi41g00098 1014 Pfam Argonaute linker 1 domain 324 375 IPR014811 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00098 183 991 Eukaryotic Initiation Factors Gene Family AT1G48410 34.426 2.11e-139 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00098 K11593 - gmx:100783571 1491.86