Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00096 ATGGCTAATTCAGCTGAACCCTCATCGTCGTTGAGTTTTACATCATCTTCGCATTTATCGAATGGATCAATTAGTCACAACTCGAATGGGAATGATCACGCTCGGAACCTGGAGGTTATCAGTTTGAGTAAGCTTAGTTCTAATTTGGAACAGCTTTTGATTGATTCTGATTATGATTACGGTGACGCGGATATCGTTGTTGAGGGAGTTTCAGTTAGAGTTCATCGGTGTATTTTAGGTTCTAGGAGTAAGTTTTTTCATGAGCTATTTAAGAGAGGTAAAGAAAAAGGATTGGCAAAGAGTGAAGGGAAGTTGAAGTATTGCTTGAGTGATTTGTTGCCTTATGGTAAAGTGGGGCATGAAGCTTTTCTTATATTGCTTAGCTATGTATATACCGGTAAACTTAAACAGTCTCCAGTGGAGGTTTCTACATGTGTTGATAATGTGTGTGCTCATGATGCGTGTGGACCTGCTATTAACTTTGCTGTGGAGTTGATGTATGCATCTTCCATTTTTCAAATGCCGGAGTTGGTTTCACTTTTCCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTCGAAGACGTCATTTCCATCCTTATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTCGCTCAATGTGTTGACAGGGTGGCACGATCAGACCTTGACCAAATCTCAATCGATAAAGCACTTCCTCATGAGCTCTCCGAAAAAGTTAAATTGTTCCGCCGTGATCTTCAGAAAGACGGTGAAGAGGATGCTCCCGTAATGGACGCTTTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGACGACGTCGAGCTTGTTAAACTTCTTTTGAACGAGTCAGACATTTCTTTAGATGAAGCCGGTGCTCTCCATTATGCAGCAGCCTACTGTGACCCTAAGGTTGTCTCTGAAGTACTTGGATTAGGTCTAGCTAATGTCAATCTTCGGAATTCTCGAGGGTACACAGTGCTTCACGTTGCCGCCATGCGTAGGGAACCTTCCATTATAGTATCACTTCTTACTAAAGGGGCTTGTGCATCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGACCGAAGGATTATCACACAAAAACAGAACAAGGAAAAGAAACAAACAAAGACCGGATATGCATCGACGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATCCCTCTGTATCATCCCAAACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACCGAGTGGCATTTGCGAGACTGTTGTTCCCTTTGGAAGCCAAACTAGCTATGGACATTGCTCGTGCGGAGACAACATCCGAGTTTGCTGGTCTTTCGGCGGCGAAAGGTTCAAGTGGAAACTTAAGGGAGGTCGACCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTATTTCTAGGATGGAAGCCCTAATGAAAACAGTGGAAATGGGGCGGCGTTACTTTCCTCATTGCTCGGAAGTGCTCGATAAATTCATGGAGGATGACCTACCTGACCTGTTTTACCTTGAGAAGGGAACTCAAGAAGAGCAGAGAATCAAGAGGACGCGATTCGTGGAGCTTAAAGACGATGTGAACAATGCTTTTAGCAAGGACAAGGCTGAGTTTAGTCGCTCTGGGATTTCATCTTCATCATCCTCGTCATCTCTTAGAGATTCTGTATATTACAAGGCTAGGAAAATATGA 1761 0.4321 MANSAEPSSSLSFTSSSHLSNGSISHNSNGNDHARNLEVISLSKLSSNLEQLLIDSDYDYGDADIVVEGVSVRVHRCILGSRSKFFHELFKRGKEKGLAKSEGKLKYCLSDLLPYGKVGHEAFLILLSYVYTGKLKQSPVEVSTCVDNVCAHDACGPAINFAVELMYASSIFQMPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIDKALPHELSEKVKLFRRDLQKDGEEDAPVMDALSLKRITRIHKALDSDDVELVKLLLNESDISLDEAGALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHVAAMRREPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDPSVSSQTVADDLHMKLLYLENRVAFARLLFPLEAKLAMDIARAETTSEFAGLSAAKGSSGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFVELKDDVNNAFSKDKAEFSRSGISSSSSSSSLRDSVYYKARKI 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00096 586 SUPERFAMILY POZ domain 50 187 IPR011333 -
Vivi41g00096 586 Pfam BTB/POZ domain 59 180 IPR000210 GO:0005515
Vivi41g00096 586 PANTHER REGULATORY PROTEIN NPR3 10 576 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vivi41g00096 586 CDD BTB_POZ_NPR_plant 44 189 - -
Vivi41g00096 586 Gene3D - 263 403 IPR036770 -
Vivi41g00096 586 SMART ANK_2a 266 294 IPR002110 GO:0005515
Vivi41g00096 586 SMART ANK_2a 329 361 IPR002110 GO:0005515
Vivi41g00096 586 SMART ANK_2a 295 325 IPR002110 GO:0005515
Vivi41g00096 586 Pfam NPR1/NIM1 like defence protein C terminal 371 573 IPR021094 -
Vivi41g00096 586 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Vivi41g00096 586 SUPERFAMILY Ankyrin repeat 263 372 IPR036770 -
Vivi41g00096 586 ProSiteProfiles BTB domain profile. 61 139 IPR000210 GO:0005515
Vivi41g00096 586 Gene3D Potassium Channel Kv1.1; Chain A 26 221 IPR011333 -
Vivi41g00096 586 SMART BTB_4 61 189 IPR000210 GO:0005515
Vivi41g00096 586 FunFam Regulatory protein NPR3 35 221 - -
Vivi41g00096 586 FunFam regulatory protein NPR3-like 263 403 - -
Vivi41g00096 586 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Vivi41g00096 586 Pfam Ankyrin repeats (3 copies) 272 354 IPR002110 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi41g00096 NPR1_like_C 8.6e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00096 K14508 - gmx:100217338 935.25