Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00080 ATGGAGGATCCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGTCTCGACGCTCCTCCTTCCGCCGCCACCGCATCCGCCTCCGTTGCCGCCGCACCTTCTGGCCCTATTGTCCAGCCTGATTCCTACTTACCACCTTCCGCGGCCTCCAATGGCGCCGCCGCTCCTTCCGTTGCTGAGCCTGTTTCTGGTAACGTTCCTGGACGACGGAGCTTCCGGCAAACGGTTTGTAGGCACTGGCTTCGGAGTTTGTGTATGAAAGGAGATGCTTGCGGGTTTTTGCATCAGTATGATAAGGCTCGGATGCCGGTGTGCAGGTTTTTTAGATTGTATGGAGAGTGTCGTGAGCAGGATTGTGTTTATAAGCATACTAATGAAGATATCAAGGAGTGTAACATGTACAAGCTAGGATTTTGTCCTAACGGACCTGATTGTCGATACAGGCATGCGAAGTCTCCTGGACCTCCGCCTCCAATTGAAGAGGTCCTTCAGAAGATCCAACACTTGTATTCTTACAATTATAACAATTCTCATAAGTTTGCCCAACAAAGGGGTTCTAGCTATACTCAACAAGTTGAAAAGTCTCAGTTTCCTCAAGGAATCAATTCTGCAAACCAAGGCGTGGCTGTAAAACCATTAGCTGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGCCTCAGCCGCAAGTCAGCCAGAACCAAGCGCAAAATCTTGCTAATGGCCAGCCCAATCAAGCCAATCGAACATCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAACTAAATGAAGCATTTGACTCTGTAGAAAATGTGATATTGGTTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACTTCCAGAATTGGTGGTTCTGTTCCTGGAGGGAACTGGAAATATGCTCATGGGACGGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGAAATCCATACAATGAGAACTTACCAGTGAAGATTAGTAGAGATTGTCAGGAGCTGGAACCCTCTATCGGTGAGCAGTTGGCATCCTTGCTTTATGTTGAACCAGATAGCGAACTTATGGCTATCTCGGTTGCAGCTGAGTCTAAACGAGAAGAGGAGAAGGCAAAGGGAGTGAATCCAGAAAATGAAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAGGAAAGTGATGAAGAGGAGGAGAGCTTTGGTAATGGTGTAGGGCCAGTTGTTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCCCCTCACATGCATCTCGGACGCGGAGCCAGACCCATGCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGACGGATTACCCTACGGGCCTCCTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGCCCCCCAGCTGCCATGATGTTCCGAGGGCGACCATCACAACCTGGCATGTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCATGGACGCGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCAAATCCCCCAAGAGGTGGTAGGCCAGTAAATATGCCTCCGATGTTTCCACCACCTCCGCCTCCACCACAAAATATGAACCGCATTGCCAAGAGAGATCAAAGAACAAGTGATCGAAATGATAGGTACAGTTCAGGACCAGAGCAAGGTAGGAGTCAAGACATGCTCAGTCAAAGTGGAGGTCCTGATGATGACATGCAGTATCAGCAAGGATACAAGTCGCAGCAGGATGACAAGAATGACGATAGTGAAAGCGAAGACGAGGCACCTAGGCGGTCAAGACACGGAGAGGGTAAAAAAAGAAAAGGCGAAGCTTAG 2055 0.4822 MEDPEGVLSFDFEGGLDAPPSAATASASVAAAPSGPIVQPDSYLPPSAASNGAAAPSVAEPVSGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNSHKFAQQRGSSYTQQVEKSQFPQGINSANQGVAVKPLAAESGNVQQQQQVQQPQPQVSQNQAQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVPGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYVEPDSELMAISVAAESKREEEKAKGVNPENEGENPDIVPFEDNEEEEEEESDEEEESFGNGVGPVVQGRGRGRGMMWPPHMHLGRGARPMPGMQGFNPVMMGDGLPYGPPGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNHGRGPFMGGMGVPGPNPPRGGRPVNMPPMFPPPPPPPQNMNRIAKRDQRTSDRNDRYSSGPEQGRSQDMLSQSGGPDDDMQYQQGYKSQQDDKNDDSESEDEAPRRSRHGEGKKRKGEA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00080 684 SUPERFAMILY CCCH zinc finger 71 102 IPR036855 GO:0046872
Vivi41g00080 684 MobiDBLite consensus disorder prediction 581 605 - -
Vivi41g00080 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 30 676 IPR045168 -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 432 454 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 654 684 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 573 684 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 219 256 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 411 471 - -
Vivi41g00080 684 CDD YTH 262 396 IPR007275 GO:0003723
Vivi41g00080 684 Gene3D - 67 128 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 411 426 - -
Vivi41g00080 684 Gene3D ph1033 like domains 239 399 - -
Vivi41g00080 684 ProSiteProfiles YTH domain profile. 261 396 IPR007275 GO:0003723
Vivi41g00080 684 MobiDBLite consensus disorder prediction 610 624 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 625 653 - -
Vivi41g00080 684 MobiDBLite consensus disorder prediction 41 66 - -
Vivi41g00080 684 ProSiteProfiles Zinc finger C3H1-type profile. 125 152 IPR000571 GO:0046872
Vivi41g00080 684 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Vivi41g00080 684 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 66 127 - -
Vivi41g00080 684 Pfam YT521-B-like domain 261 395 IPR007275 GO:0003723
Vivi41g00080 684 SMART c3hfinal6 127 151 IPR000571 GO:0046872
Vivi41g00080 684 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Vivi41g00080 684 SMART c3hfinal6 71 97 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi41g00080 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00080 K14404 - gmx:100802826 1052.35