Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00053 ATGATGGCACTTTCTATGCATAAAGAAGCTAATAATCAAATGGATGCTGGGAAGTATGTGAGGTACACTCCTGAACAAGTTGAAGCTTTGGAGAGAGTTTACACAGAATGTCCTAAGCCCAGCTCTTTGAGAAGACAGCAGCTTATCAGGGAGTGTCCTATTCTGTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAAAGAAAGGAAGCCTCTCGTTTGCAGACAGTGAATAGAAAACTGTCTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAAGTTTCTCATCTGGTTTATGAGAATGGATACATGAAGCAACAGATTCACACTGCTTCTGCTGCAACTACCACAGACAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAACCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCCAACAACCCAGCTGGTCTCCTCGCCGTGGCTCAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATTGTTGCTGTTTCCCGCAATTGTAGTGGGATAGCGGCACGTGCCTGTGGCCTTGTGAGTCTAGAACCCACTAAGGTTGCCGAGATTCTTAAAGATCGACTGTCATGGTATCGTGACTGTCGATGTGTTGATGTTTTGAATATTGTCCCCACCGGAGGTGGTGGGACAATAGAGCTTTTGTATATGCAGACATATGCGCCTACAACATTGGCTGCAGCTCGAGACTTTTGGACACTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGGTCGTTGAATGTTTCAACTGGTGGTCCAACAGGGCCTGCTCCGACGAATTTTGTGAGGGCTGAAATGCTTCCAAGTGGTTTTCTGATTAGGCCATGTGAGGGTGGTGGATCTATTATTCATATTGTTGATCATGTTGACTTAGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCGTCAAAAATCTTGGCTCAAAAACTAACTATTGCTGCTTTACAACATGTAAGACAAATAGCTCAGGAGTCCAGTGGTGAAATTCAGTATGGTGGCGGGCGCCAACCTGCTGTTTTGAGAACATTTAGTCAGAGACTTTGCAGAGGGTTTAATGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCTTTGCTGGGAAATGATGGTGTTGAAGATGTGACTATTTCTGTGAACTCTTCTCCAAACAAGTTTTTGGGGTCTAATTACAATTCATCAATGTTCCCAGCATTTGGAGGTGGTGTCTTGTGTGCCAAGGCTTCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGCTTTTTGCGGGAGCATCGATCAGAATGGGCTGATTATGGTGTTGATGCGTACTCTGCTGCTTGTCTCAAGTCTAGCCCCTATGCAGTTCCTTGTGCAAGACCTGGTGGTTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCCCCTACGGTCGAGCACGAAGAGTTCCTTGAGGTAGTTCGTATAGAGGGCCATGCATTTACACCCGAAGATGTTGCATTGGCACGTGATATGTATCTTTTACAGCTCTGTAGTGGAATTGATGAAAATTCGATTGGAGCATGTGCTCAACTGGTCTTTGCACCTATAGATGAATCCTTTGCTGATGACGCCCTTTTGCTTCCTTCTGGATTTCGTATTATTCCTTTGGATCCTAAATCAGATGGTCCGGCTACATCAAGGACATTGGATTTGGCATCAACACTTGAAGTGGGATCCAGTAACGCTCGAGCAGCTGGTGAAGGTGGTGATGGATACAACCTTAGATCTGTTCTTACTATCGCATTTCAGTTTACCTTTGAGAATCATCTGCGTGACAATGTTGCTGCCATGGCCCGTCAATATGTACGAAGTGTTGTTGGATCCGTTCAGAGGGTTGCCATGGCTATTGCTCCGTCTCGCCAAGGTCCCCAGCTTGGTCCTAAATCACTTCCTGGTTCGCCCGAAGCTCATGCGCTAGCACGATGGGTCTGTAGAAGCTACAGGATGCACACTGGTGCCGAGCTTTTCCGTGTCGACTCTACGGCTAGTGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTGAAAACAACTGCATCTCCAATATTCACCTTTGCAAACCAAGCTGGACTAGACATGCTTGAAACAACTCTAGTTGCACTTCAGGATATAATGCTGGATAAAGTACTTGATGAAGCTGGCAGAAAGATTCTTTGCTCTGAATTCTCCAAGATAATGCAACAGGGTTATGCTTATCTGCCAGCAGGGATATGTGTATCAAGCATGAATAGGCCAGTTTCTTATGAGCAAGCCATTGCATGGAAAGTTCTTAATGATGATGATGCCAATCACTGCCTAGCATTCATGTTCATCAACTGGTCCTTTGTCTGA 2535 0.4529 MMALSMHKEANNQMDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDANNPAGLLAVAQETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLNIVPTGGGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLNVSTGGPTGPAPTNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHVRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTISVNSSPNKFLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRIEGHAFTPEDVALARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKSDGPATSRTLDLASTLEVGSSNARAAGEGGDGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRQGPQLGPKSLPGSPEAHALARWVCRSYRMHTGAELFRVDSTASDAILKQLWHHSDAIMCCSVKTTASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDANHCLAFMFINWSFV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00053 844 Pfam START domain 166 374 IPR002913 GO:0008289
Vivi41g00053 844 Coils Coil 83 107 - -
Vivi41g00053 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Vivi41g00053 844 Pfam MEKHLA domain 699 843 IPR013978 -
Vivi41g00053 844 ProSiteProfiles START domain profile. 156 357 IPR002913 GO:0008289
Vivi41g00053 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 844 IPR044830 GO:0003700
Vivi41g00053 844 SMART HOX_1 15 81 IPR001356 GO:0003677
Vivi41g00053 844 CDD homeodomain 18 78 IPR001356 GO:0003677
Vivi41g00053 844 Gene3D - 10 84 - -
Vivi41g00053 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Vivi41g00053 844 SUPERFAMILY Bet v1-like 166 377 - -
Vivi41g00053 844 Gene3D - 200 381 IPR023393 -
Vivi41g00053 844 CDD bZIP 70 109 - -
Vivi41g00053 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vivi41g00053 844 CDD START_ArGLABRA2_like 160 376 - -
Vivi41g00053 844 MobiDBLite consensus disorder prediction 133 157 - -
Vivi41g00053 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Vivi41g00053 844 MobiDBLite consensus disorder prediction 133 158 - -
Vivi41g00053 844 SMART START_1 165 375 IPR002913 GO:0008289
Vivi41g00053 844 SUPERFAMILY Bet v1-like 413 600 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00053 1 844 Homeobox Transcription Factor Family AT2G34710 78.037 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi41g00053 START 1.3e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00053 K09338 - gmx:100779499 1544.25