Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00049 ATGGCGTGGCACAAGGTAGGGAAAAGAAATTTCAAGAACTTGACGTCTAAATGGGACGTTTCTCCGGTAGGTTCAAGGCTTTCGGAAGCGAAGCGGAATGCTTTGACCTCTATTTTCTTCTCAGAAATACCGGAAAGAATAACTTCCTCTGAGATTTTTGAACTATTCGGTTGTGTTGGTGATATTATAGAAGTTGTTATATCACCAAGAAGGAACAAGTTTGGAAAGAGATTTGGTTTCGCCAGATTCGAAAATGTTGAGGATGGAAGAGTTTTAGCCGTGAAGCTCGACAACATTTTAATTGATGGGAGGAAGATTCACGCTAACCTACCTCGTTTCTCTAGAAGCTTTCAGTCGAGGGGCTCTTTTGGAGTCGAGAAAGCGGTTGGGGAGGCGGGGAAAAGGAGTGGAGGCGTTCCCCAAAAGCACAACGACGGAAGCACGATGAGGTTCTCGAGTTTTAGGAACAAGGAGGGAAGTAGATCCTTCGTGGATGCTGTCAAAGGAGGCAAATATCATTGCTATCTTAGTTACAACTCGACTGAAGAAAACTTAGAAAGATTCAAAAGAGCTTTCGTGGGTGTGATAGTTAATCCGGGCATGTCTTACAATATTCAAACGAGTTTTGAGGTGGAGGGATACTTTTCAATCAAGGTCACACCTTTAGGTGCTAACCTGTGTCTTTTAGAGGATATTGATGATGGTGCGGTTCGTGACTTGATTGAGGAAGGTAGAAGCTGGTGGTCTCAGTGGTTCTCAGAGATTAGAGAATGGAGGGAGGATGACGTTGACAGAGAAAGAGCAACTTGGTTGAGAGTTTACGGGATTCCATGCCATGCATGGAATTTCGAGTTTTTTGAGATGATCGCGAAGACCGTTGGTACTTATGTCTGTGTAGATGATAATACTCAGAAGGGGGAACATATGGATATTGCTAGGATTTTGGTAAAGACTCCATGCATGATTGCTCTAAACGAATCCTTTAGTGTTTGCATCAATGGAACTGTTTTTAAGATCAAGATTTCTGAAGATTCTTATGGTCCCATGCGTATCAACTTGTTTCAGAAGGGTAAGAAGATTGAGGATCCTTCATCTTCATCCGAATCGGATTTTGGATGGGGCGCATCCGAGTTTGAATGTGGAGAAGGTGGGGAGGCTTTTTCAGCTTCAAAAGTTGCGGAATCGAAAGAGGCGACAGTTATGGACAACAGGGGGTTAGATGTGGTGCTCGAGGATTTTCAGGGCGAGGTGACTAAAGGGAAAAGTGTGTCAGATAGAAAGCTTGTTAAAGGAGATATTTGTTTTGATTCAGCAGTAAAGGTAGCCAGGGAGGTGTCTGCAAGCGGGTCAATCAATAGTGGGGCCAATCTGTGTTGTCCTGGTCTTAAGGAGAAGACTGATGTTTATTCAGTGGATACTTTTTTCAAAGAAAATAAACGTGTGGATTATAAACCTTTGGTCAAACCTAAGACTAATAAGATGGGCGTAGTTAAGACTCTGTGTGGGCTTAAGGTTGGGAAAAAGATAAGGCCCAAAAAAAGGTCTCTTTTGAAAGTGGATGTTGGACCGGTTTCTGGCGGAAATGAGGGCCCAGACCCAAGTTTGAAGCTAGACATTGCGAAGAGGTTATCACAGCTTTCTGAATCTCCTATTCTCTCTCCGACATCTAGCAATAGCGTGAATAACAGCTTCTCGGCGGGTAACATTCTATGTTGCGATCAAGTTTCAGATTCAGACATGATACAGGGCAATTCCAGATTTTGGGATCATTTACATTCAAATGTAGGAGAGAAATTGGGTGATCTCATCTCAAAGTTAGGGGTGATGGATGGCGATGGTAACAACGATTTTAGACAGAAGGTTGCGGAATTGGAACTTGGAGATAGTAAGAAGAAGTTTGGTGCGAAGGTGATCGTTAATCTGGACCCATGA 1932 0.4312 MAWHKVGKRNFKNLTSKWDVSPVGSRLSEAKRNALTSIFFSEIPERITSSEIFELFGCVGDIIEVVISPRRNKFGKRFGFARFENVEDGRVLAVKLDNILIDGRKIHANLPRFSRSFQSRGSFGVEKAVGEAGKRSGGVPQKHNDGSTMRFSSFRNKEGSRSFVDAVKGGKYHCYLSYNSTEENLERFKRAFVGVIVNPGMSYNIQTSFEVEGYFSIKVTPLGANLCLLEDIDDGAVRDLIEEGRSWWSQWFSEIREWREDDVDRERATWLRVYGIPCHAWNFEFFEMIAKTVGTYVCVDDNTQKGEHMDIARILVKTPCMIALNESFSVCINGTVFKIKISEDSYGPMRINLFQKGKKIEDPSSSSESDFGWGASEFECGEGGEAFSASKVAESKEATVMDNRGLDVVLEDFQGEVTKGKSVSDRKLVKGDICFDSAVKVAREVSASGSINSGANLCCPGLKEKTDVYSVDTFFKENKRVDYKPLVKPKTNKMGVVKTLCGLKVGKKIRPKKRSLLKVDVGPVSGGNEGPDPSLKLDIAKRLSQLSESPILSPTSSNSVNNSFSAGNILCCDQVSDSDMIQGNSRFWDHLHSNVGEKLGDLISKLGVMDGDGNNDFRQKVAELELGDSKKKFGAKVIVNLDP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00049 643 Gene3D - 22 121 IPR012677 -
Vivi41g00049 643 SMART rrm1_1 37 109 IPR000504 GO:0003723
Vivi41g00049 643 PANTHER DUF4283 DOMAIN PROTEIN 176 345 - -
Vivi41g00049 643 CDD RRM_SF 38 109 - -
Vivi41g00049 643 Pfam Domain of unknown function (DUF4283) 214 316 IPR025558 -
Vivi41g00049 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 107 IPR000504 GO:0003723
Vivi41g00049 643 SUPERFAMILY RNA-binding domain, RBD 24 121 IPR035979 GO:0003676
Vivi41g00049 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00049 10 137 Eukaryotic Initiation Factors Gene Family AT1G34140 25.373 4.83e-06 47.4