Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi41g00020 ATGAATTCATCACTAGCAGGTGCGGGAGCGGGATCCGGTGACGATGAAATTGATAACTCATCAAATGATAGAAGAGCTTCCTACAAACGCCTTACTACAACTCAATCAACTATACTTGAAAATTTCATGAAGGAATGCCACCATCCAGACGATGCTCAAAGACGTCAATTGGCTGAAGAGGTTGGGCTTGAGCCCAAACAAATCAAGTTTTGGTTTCAGAATAAGAGAACTCTGATGAAGAATCAACATGAGAGGGAAAATAACTCTTCTCTTCGTCTGGAGAATGAAAGGATTCATAATGAAAACCTCTTAATCAAAGAGGCACTGAAAGCCACAATTTGTTCAACTTGTGGAGGTCCTCCATTTCCTCAAGAAGAGCATGAACATTTCATGCGCAGCATGGAACAGGAAAATGCTCAGCTCAAACAAGAGTGTGACAAAGTGTCAAACCTCATTGCAAACTACATGGAGAAAAAGATATCTCTACCTGAGTTTGAGCAAGCTCTTGCTACTGTGAAATCATTCTCAAGAGATAGAGACCTTGAACTTTCACCAAACCAAACGGTCTATGAAACCCTAAGGCATGTTCATGTTCATGTTCACGGTAACCTATCCATGAGAGAAGCTATGTTAGTGAACATCTCTGAGCAAAGCCATGATGAACAAAAGAGAATGATGTCTCGAATTGCAACCATTGCAATGGAAGAGTTAGCTAGGCTTGTGAGAGTTAACGAGCCTTTTTGGGTTTACACTACAAATGCTCCAGATGGGAGATTCACTCTTGATCGTGAGAGTTACGAGCAAGTTTTTCCTAAGGACAATCACTTTCAAGGTGCAAATGTGTGTGAAGAATCTTCAAAATTTTCTGGAGTTGTGAAACTTGGTGGCTTGCAGCTGGTTGACATGTTTCTAGACCCGGTCAAATGGAAAAACTTGTTCCCAACAATTGTTACCAAAGCTGAAACTGTGAAAGAGTTTGAACCTGGTTCAACAGAAAATCGAGATGGTGCTTTGCTTTTGATGCATGAACAAATGCACATTTTATCTCCTCTTGTGCGCCCTCGCGAATTCAACATCCTTCGTTACTGCAAACAAGTTGATGCTGGCGTATGGATGATTACTGATGTATCGATTGATTCATCTCGACCGAATACTATTCCTCTCTGTCAATCCTGGAAGTATCCATCCGGATGCATAATCCGCGAATTGCCTCATGGTGCCTGTCTGGTTACTTGGGTTGAACATGTGGAAGTGGAAGATAAGATTCATACACACCTTGTGTATAGACATCTTATCCGTAGCTTTAATCTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGTGAAAGATCTATCAGCTTTTATGCTGAAACTACACCTAATCAAGAAACTGCAGGAGTGATCACATCAATTGAAGGGAGGCAAAGTGTGATGAAGTTTGCTCATAGAATGGTTAAGATGCTATGTGAAAGTTTAACAATGTCAGGTCAATTGGAATTTCAACATGTAACTCTTGATAGCGTTGGCGGAGTTAGGGTTTCTATTCGCAAAAACAACAATTATGGCCAACCAAAGGGCACGGTTGCTGTCGCTGCTACCACCATTTGGCTCCCTCTTCCTGCTCAAAAGATCTTCGAGTTCCTCAGAGATCCTACAAAAAGATCTAAGTGGGATGTCCTTTCGTCTGCAAATCCAATGGTTGAGATTGCACACATCTCCAATGGACCCTATCCTGGCAACAGCATTTCAATTATTCAGCCATCTATCCCTCGCGAAGACCAACCGGTGATCCTCCAAGAAAGTTTCACATCTACTGTGGGATCCTACATTATATTCGCTCCCACAGATAGATCATCTATGAATATAGCCATTCGAGGTGAAGAGTCAAAGGGGCTAGAAATTCTTCCAACAGGATTTGTTATTTGCTCAAAAGCTAAACCGAATGCAACTTTCGAAACATCTGGCAATATTGGAAGTGGTGCTGGTGGAGGTGGTGAGGCTGGATCATTGTTGACTTTGGCTTATCAAATTCTTATCTCTACTTCAACTGGAATTGGCACACAGCAACATATGGAATCTATGGCTTCTATCAACTCCCTTCTGTCCGGTACTGTTCGAAACATTAAGGATGCTCTCATGTGA 2151 0.4175 MNSSLAGAGAGSGDDEIDNSSNDRRASYKRLTTTQSTILENFMKECHHPDDAQRRQLAEEVGLEPKQIKFWFQNKRTLMKNQHERENNSSLRLENERIHNENLLIKEALKATICSTCGGPPFPQEEHEHFMRSMEQENAQLKQECDKVSNLIANYMEKKISLPEFEQALATVKSFSRDRDLELSPNQTVYETLRHVHVHVHGNLSMREAMLVNISEQSHDEQKRMMSRIATIAMEELARLVRVNEPFWVYTTNAPDGRFTLDRESYEQVFPKDNHFQGANVCEESSKFSGVVKLGGLQLVDMFLDPVKWKNLFPTIVTKAETVKEFEPGSTENRDGALLLMHEQMHILSPLVRPREFNILRYCKQVDAGVWMITDVSIDSSRPNTIPLCQSWKYPSGCIIRELPHGACLVTWVEHVEVEDKIHTHLVYRHLIRSFNLYGAESWIKELQRMCERSISFYAETTPNQETAGVITSIEGRQSVMKFAHRMVKMLCESLTMSGQLEFQHVTLDSVGGVRVSIRKNNNYGQPKGTVAVAATTIWLPLPAQKIFEFLRDPTKRSKWDVLSSANPMVEIAHISNGPYPGNSISIIQPSIPREDQPVILQESFTSTVGSYIIFAPTDRSSMNIAIRGEESKGLEILPTGFVICSKAKPNATFETSGNIGSGAGGGGEAGSLLTLAYQILISTSTGIGTQQHMESMASINSLLSGTVRNIKDALM 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi41g00020 716 Coils Coil 124 158 - -
Vivi41g00020 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 715 IPR042160 -
Vivi41g00020 716 CDD START_ArGLABRA2_like 223 452 - -
Vivi41g00020 716 ProSiteProfiles START domain profile. 219 456 IPR002913 GO:0008289
Vivi41g00020 716 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Vivi41g00020 716 Gene3D - 12 98 - -
Vivi41g00020 716 MobiDBLite consensus disorder prediction 1 29 - -
Vivi41g00020 716 SUPERFAMILY Bet v1-like 218 453 - -
Vivi41g00020 716 Pfam START domain 232 453 IPR002913 GO:0008289
Vivi41g00020 716 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Vivi41g00020 716 SMART START_1 228 453 IPR002913 GO:0008289
Vivi41g00020 716 SUPERFAMILY Homeodomain-like 18 87 IPR009057 -
Vivi41g00020 716 Gene3D - 260 453 IPR023393 -
Vivi41g00020 716 CDD homeodomain 30 83 IPR001356 GO:0003677
Vivi41g00020 716 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Vivi41g00020 716 SUPERFAMILY Bet v1-like 476 649 - -
Vivi41g00020 716 SMART HOX_1 24 86 IPR001356 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi41g00020 21 715 Homeobox Transcription Factor Family AT1G73360 39.100 2.27e-164 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi41g00020 START 4e-29 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi41g00020 K09338 - gmx:100795075 734.561