Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi419g00003 ATGAAGAGAGTAAGAAACAATGAAACTAGTGAGGTAGACATGGGTGGTGCTTTCAAGTGCAAGACATGTAGTAAAGAATTCCTTTCATTTCAAGCTCTTGGTGGACATAGGGCTAGCCACAATAAGCTTAAGCTAATTGGCAGAAACCAGAAGAAGTTGCATGTATGTTCTATTTGTGGGCTTCAATTTGCAACTGGACAAGCACTTGGAGGGCACATGAGAAAGCATAGAACAGGTCCAGGTCCAGTTCATGATTATGATCAAGATGAGGCCATGGCTAATAGTCCTAAAAGATTTCATTTCTTCTTGGATTTGAACTTGACACCCTATGAGAATGATCTAAAGTTGCTTAACTTCTTCTTTTTTGAGGCATTAAGTACCTTCACTTAA 390 0.3923 MKRVRNNETSEVDMGGAFKCKTCSKEFLSFQALGGHRASHNKLKLIGRNQKKLHVCSICGLQFATGQALGGHMRKHRTGPGPVHDYDQDEAMANSPKRFHFFLDLNLTPYENDLKLLNFFFFEALSTFT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi419g00003 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 82 IPR013087 -
Vivi419g00003 129 PANTHER ZINC FINGER PROTEIN ZAT5 13 112 - -
Vivi419g00003 129 Pfam C2H2-type zinc finger 17 42 - -
Vivi419g00003 129 Pfam C2H2-type zinc finger 54 77 - -
Vivi419g00003 129 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Vivi419g00003 129 SUPERFAMILY beta-beta-alpha zinc fingers 18 76 IPR036236 -
Vivi419g00003 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Vivi419g00003 129 Gene3D Classic Zinc Finger 15 82 - -
Vivi419g00003 129 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Vivi419g00003 129 SMART c2h2final6 54 76 IPR013087 -
Vivi419g00003 129 SMART c2h2final6 18 40 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi419g00003 4 117 C2H2 Transcription Factor Family AT3G53600 46.154 6.54e-28 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi419g00003 zf-C2H2_6 1e-10 CL0361