Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi417g00012 ATGATAACCGATATGAAAAGTGGTGGTGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCGAGAGCTTGTGATAGCTGTATGAGAAGAAGGGCACGTTGGTTCTGTGCTGCTGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTGGTTCATTCGGCGAATCAGTTAGCGAGTAGACACGAAAGGGTTCGTCTTCAAACCGCGTCTGGTAAGGTAGCAACGACGACAGCAACTGCGAAAGCATGGCATAGTGGATTCACTAGAAAGGCGAGGACGCCGCGTCATAATAAGAATTCGTCGATTCAACTACAGCAACAGCGGCTTAAGGAGAAGGTTCTTTTTAATACTAGTTTTCTTCCGCTCGTTCCTGAGCTCGGAGGGGAAGAAGAAGAAGAAGAACGGGAGCGGGAGTTACTAGTTGATATTAATGAGATTGCGGGGGAGGAGGAGGAGGAGGAGCAGTTGCTGTGTCGCGTCCCGGTTTTTGATGTAGGCCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGCTGCTGATTTCGAGGACATGTGTGATTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAGTTTGCAGCAAATGTTGAGAGTTTACTTGGTGTTGGGAGTACTAGTGAGATTCATGAGAATTCGTCGGAACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATCCATCAAAAAATGAAGTATTGAAGGTTAAAGATGAAGAACTTGATGACTTGGAATCGGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATATTGATCATGATGAATCAATGGGACACCAAGAGAAAGAGTTTATGCCTTTGAGTATTAATAGTAGTGTTGGTGTTAGTGAGAGTGTTATTACTAAAGAGGAAACTAAAAGAGAGAGATTTTTGAGACTAAACTATGAAGATGTTATTAGTGCTTGGACTAGGCAAGGCTCTCCTTCTCCATGGACTACCGGAAACCCTCCTAAGTTCAACTCCGATGATGATTCATGGCAAAACTTCTTGGGTCCAAGTGGTGTAGAAGGAGAAATAAGAACCCTAAGAGGGAACTTAATAGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACAACATGTTTTGCTGGAGGAGCAACTTCATTTCCAACTAATTATCACTGA 1290 0.414 MITDMKSGGADAGALGAKTARACDSCMRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASGKVATTTATAKAWHSGFTRKARTPRHNKNSSIQLQQQRLKEKVLFNTSFLPLVPELGGEEEEEERERELLVDINEIAGEEEEEEQLLCRVPVFDVGPFDLENCNVKNDAADFEDMCDLDSFCEFDVDLAEFAANVESLLGVGSTSEIHENSSEQVFDYKQENEMDPSKNEVLKVKDEELDDLESVFDMTSDEVFHWNIDHDESMGHQEKEFMPLSINSSVGVSESVITKEETKRERFLRLNYEDVISAWTRQGSPSPWTTGNPPKFNSDDDSWQNFLGPSGVEGEIRTLRGNLIGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTTCFAGGATSFPTNYH 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi417g00012 429 Pfam CCT motif 371 413 IPR010402 GO:0005515
Vivi417g00012 429 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Vivi417g00012 429 ProSiteProfiles CCT domain profile. 371 413 IPR010402 GO:0005515
Vivi417g00012 429 SMART bboxneu5 18 65 IPR000315 GO:0008270
Vivi417g00012 429 Pfam B-box zinc finger 20 63 IPR000315 GO:0008270
Vivi417g00012 429 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 416 - -
Vivi417g00012 429 CDD Bbox1_BBX-like 22 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi417g00012 12 413 C2C2-CO-like Transcription Factor Family AT1G25440 42.563 2.50e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi417g00012 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi417g00012 - - adu:107478728 412.535