Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi417g00009 ATGGAGAAAAGGAAGAACTCAACCAACAAAAAAGAAAATGTAGAAGTAACAGTCAAAAAACAAAATCATTCAACAACTCAAATTACACACATCAAATCTGAAGAAGTTGAGATTATTGACGGGGTGAAGCTTTATCTCAAAGATGGTGAACAGAAATTGACTTCTACAAGTAAATATAAAGGTGTTCGACTTAGATGGAGAAGATACTCTGCTGAGATTCGAGATCCATTTGCAAAGAAAAGAATATGGCTAGGTACTTTTGATACTGAAATACAAGCTGCTATGACTTATAGTCGAAAGATGGATGAGTATGAAGAAAGAAAGCTAGCTGAAATTACATCGTTGGATGATTTTACTATTAGTCCATCATGCAAGGAAGAGGGGGAATCGTGTCATAACTATGACGATCCATCTAATGATGATGACAACGACGACATTGGTGGTGGTGGTTTAAATCTGATGCACTTAGGTGCTCATGATATGTCAAAGATTCGACCTTAG 501 0.3633 MEKRKNSTNKKENVEVTVKKQNHSTTQITHIKSEEVEIIDGVKLYLKDGEQKLTSTSKYKGVRLRWRRYSAEIRDPFAKKRIWLGTFDTEIQAAMTYSRKMDEYEERKLAEITSLDDFTISPSCKEEGESCHNYDDPSNDDDNDDIGGGGLNLMHLGAHDMSKIRP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi417g00009 166 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 100 - -
Vivi417g00009 166 SMART rav1_2 58 106 IPR001471 GO:0003700|GO:0006355
Vivi417g00009 166 Gene3D AP2/ERF domain 57 112 IPR036955 GO:0003700|GO:0006355
Vivi417g00009 166 CDD AP2 57 101 IPR001471 GO:0003700|GO:0006355
Vivi417g00009 166 SUPERFAMILY DNA-binding domain 57 104 IPR016177 GO:0003677
Vivi417g00009 166 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Vivi417g00009 166 MobiDBLite consensus disorder prediction 1 18 - -
Vivi417g00009 166 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Vivi417g00009 166 PIRSF PTI6 3 153 IPR017392 GO:0003700
Vivi417g00009 166 MobiDBLite consensus disorder prediction 1 25 - -
Vivi417g00009 166 MobiDBLite consensus disorder prediction 125 151 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi417g00009 58 124 AP2-EREBP Transcription Factor Family AT1G28370 47.059 9.78e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi417g00009 AP2 7.2e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi417g00009 - - vvo:131606010 282.337