Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi416g00042 ATGAGTGACTCAAAGTATACAACCACTGCAAACAATGGTCAGTATGCATATGCAGATCAAAAGAAACGCGAGACTGAGCTGGAATTCTCCCCGGAAGAAGAAGATATCATTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGAAGAATTCCTGGAAGAACAGCTGAAGATATTGAAAAGTATTGGAATTCAAAGTTCTCTTCATCAACTGCATGTTAA 234 0.3803 MSDSKYTTTANNGQYAYADQKKRETELEFSPEEEDIIAKMFRLVGKRWHLIAGRIPGRTAEDIEKYWNSKFSSSTAC 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi416g00042 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 72 - -
Vivi416g00042 77 CDD SANT 28 68 IPR001005 -
Vivi416g00042 77 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Vivi416g00042 77 SUPERFAMILY Homeodomain-like 29 71 IPR009057 -
Vivi416g00042 77 MobiDBLite consensus disorder prediction 1 18 - -
Vivi416g00042 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 75 IPR017930 -
Vivi416g00042 77 Pfam Myb-like DNA-binding domain 28 69 IPR001005 -
Vivi416g00042 77 Gene3D - 28 76 - -
Vivi416g00042 77 SMART sant 25 73 IPR001005 -
Vivi416g00042 77 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi416g00042 29 72 MYB Transcription Factor Family AT5G52600 50.000 1.21e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi416g00042 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi416g00042 - - tpra:123897785 135.576