Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi416g00040 ATGCTTATCTCAATACTAAGTTTAAGTTATCCATTCACAGCCGAAAATATGAGTGACTCAACGTATGCAACCACTGCAAACAATGATCAAAAGAAACGTGAGACTGAGCTGGAATTCTCACCGGAAGAAGAAGATATCATTGCAAAAATGTTTAGATTAGTTGGAAAAAGATGGCATCTCATTGCTGGAAGAATTCCTGGAAGAACAGCTGAAGATATTGAAAAGTATTGGAATTCAAAGTTCTCTTCATCAACTGCATGTTAA 264 0.3598 MLISILSLSYPFTAENMSDSTYATTANNDQKKRETELEFSPEEEDIIAKMFRLVGKRWHLIAGRIPGRTAEDIEKYWNSKFSSSTAC 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi416g00040 87 SMART sant 35 83 IPR001005 -
Vivi416g00040 87 CDD SANT 38 78 IPR001005 -
Vivi416g00040 87 SUPERFAMILY Homeodomain-like 39 81 IPR009057 -
Vivi416g00040 87 Pfam Myb-like DNA-binding domain 38 79 IPR001005 -
Vivi416g00040 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 85 IPR017930 -
Vivi416g00040 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 37 82 - -
Vivi416g00040 87 ProSiteProfiles Myb-like domain profile. 31 81 IPR001005 -
Vivi416g00040 87 Gene3D - 38 86 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi416g00040 39 82 MYB Transcription Factor Family AT5G52600 50.000 2.43e-13 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi416g00040 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi416g00040 - - tpra:123897785 120.168