Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi416g00031 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAGCTTAGGACAACAGCCACCGCAGCAGTACCAGCAGCCGCCACCCCAGCAACCGTACGTCATGATGCCACCTCAAGCGCCGCAAGCCTTGTGGGCCCAATCCGGCCAGCCTGCTCAGCAGCCTGCCAGCGCCGATGAGGTCCGTACTCTCTGGATCGGCGATTTACAGTACTGGATGGACGAAAACTACCTCTACACCTGCTTCGGTAACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAGGGTTATGGTTTTATTGAGTTTAATACTCGTGCTAATGCCGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCAAATGGTGGCCAGAGCTTTAGATTGAATTGGGCTACTTTCAGTGCTGGGGAGAGGTCGTCTAGGCAGGAGGAAGGTCCTGATCATACGATTTTTGTTGGAGATTTGGCTGCGGATGTTAGTGATTACCTTCTTCAGGAAACTTTTAGGGCTCGTTTTAACTCTGTCAAGGGGGCGAAAGTTGTGATTGATAGACTGACTGGTAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCGACAAGGCCAATGAGGATTGGACCAGCCACTAATAAGAATCCAGCTGCCACCACTCAGCCCAAAGCCTCATATCAGAATCCTCCTCTAGGTGGACAAAGCGAGAATGATCCTAACAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTATTCAGCCAATATGGTGAACTAGTCCATGTAAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTTCCGACAGGAGCTGTGCAGAAGAAGCAATACGAGTTCTAAACGGAACTCTATTGGGTGGACAAAATGTGCGCCTTTCATGGGGTCGTACTCCCTCAAACAAACAGACTCCACAAGATCCAAACCAGTGGGGTGCTGCTGCAGGTGGTGGATACTATGGTTATCCTCAGGGTGGTTATGAAAATTATGGTTATGCTGCTGCTCCTGCTGGACAAGATCCCAACGTGTATGGAAGTTATCCGGGTTATGCTGGTTACCAACATCCCCAGCAGCAACAACAGCAAATGGGATATAGCTAA 1209 0.4814 MMQPGHGMAPPSLGQQPPQQYQQPPPQQPYVMMPPQAPQALWAQSGQPAQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRANAERVLQTYNGTIMPNGGQSFRLNWATFSAGERSSRQEEGPDHTIFVGDLAADVSDYLLQETFRARFNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYQNPPLGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTPQDPNQWGAAAGGGYYGYPQGGYENYGYAAAPAGQDPNVYGSYPGYAGYQHPQQQQQQMGYS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi416g00031 402 FunFam Polyadenylate-binding protein RBP45 10 144 - -
Vivi416g00031 402 CDD RRM1_SECp43_like 60 140 - -
Vivi416g00031 402 MobiDBLite consensus disorder prediction 17 33 - -
Vivi416g00031 402 MobiDBLite consensus disorder prediction 233 259 - -
Vivi416g00031 402 Gene3D - 145 241 IPR012677 -
Vivi416g00031 402 MobiDBLite consensus disorder prediction 388 402 - -
Vivi416g00031 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 139 IPR000504 GO:0003723
Vivi416g00031 402 SUPERFAMILY RNA-binding domain, RBD 22 141 IPR035979 GO:0003676
Vivi416g00031 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 334 IPR000504 GO:0003723
Vivi416g00031 402 MobiDBLite consensus disorder prediction 228 259 - -
Vivi416g00031 402 FunFam Polyadenylate-binding protein RBP45C 239 370 - -
Vivi416g00031 402 SUPERFAMILY RNA-binding domain, RBD 146 237 IPR035979 GO:0003676
Vivi416g00031 402 SUPERFAMILY RNA-binding domain, RBD 245 362 IPR035979 GO:0003676
Vivi416g00031 402 CDD RRM2_SECp43_like 153 232 - -
Vivi416g00031 402 MobiDBLite consensus disorder prediction 1 33 - -
Vivi416g00031 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Vivi416g00031 402 MobiDBLite consensus disorder prediction 381 402 - -
Vivi416g00031 402 FunFam Polyadenylate-binding protein RBP45C 145 238 - -
Vivi416g00031 402 Gene3D - 11 144 IPR012677 -
Vivi416g00031 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 126 IPR000504 GO:0003723
Vivi416g00031 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Vivi416g00031 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 327 IPR000504 GO:0003723
Vivi416g00031 402 Gene3D - 242 370 IPR012677 -
Vivi416g00031 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 338 - -
Vivi416g00031 402 SMART rrm1_1 155 229 IPR000504 GO:0003723
Vivi416g00031 402 SMART rrm1_1 263 330 IPR000504 GO:0003723
Vivi416g00031 402 SMART rrm1_1 60 135 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi416g00031 237 340 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 3.46e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi416g00031 - - gmx:100801562 609.372