Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi416g00030 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAGCTTAGGACAACAGCCACCGCAGCAGTACCAGCAGCCGCCACCCCAGCAACCGTACGTCATGATGCCACCTCAAGCGCCGCAAGCCTTGTGGGCCCAATCCGGCCAGCCTGCTCAGCAGCCTGCCAGCGCCGATGAGGTCCGTACTCTCTGGATCGGCGATTTACAGTACTGGATGGACGAAAACTACCTCTACACCTGCTTCGGTAACACCGGCGAGGTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAGGGTTATGGTTTTATTGAGTTTAATACTCGTGCTAATGCCGAGAGAGTGCTTCAGACATACAATGGAACCATTATGCCAAATGGTGGCCAGAGCTTTAGATTGAATTGGGCTACTTTCAGTGCTGGGGAGAGGTCGTCTAGGCAGGAGGAAGGTCCTGATCATACGATTTTTGTTGGAGATTTGGCTGCGGATGTTAGTGATTACCTTCTTCAGGAAACTTTTAGGGCTCGTTTTAACTCTGTCAAGGGGGCGAAAGTTGTGATTGATAGACTGACTGGTAGGTCTAAGGGTTATGGTTTTGTGAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCGACAAGGCCAATGAGGATTGGACCAGCCACTAATAAGAATCCAGCTGCCACCACTCAGCCCAAAGCCTCATATCAGAATCCTCCTCTAGGTGGACAAAGCGAGAATGATCCTAACAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTATTCAGCCAATATGGTGAACTAGTCCATGTAAAGATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTTCCGACAGGTAA 924 0.4816 MMQPGHGMAPPSLGQQPPQQYQQPPPQQPYVMMPPQAPQALWAQSGQPAQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRANAERVLQTYNGTIMPNGGQSFRLNWATFSAGERSSRQEEGPDHTIFVGDLAADVSDYLLQETFRARFNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYQNPPLGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi416g00030 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 307 IPR000504 GO:0003723
Vivi416g00030 307 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 307 - -
Vivi416g00030 307 CDD RRM1_SECp43_like 60 140 - -
Vivi416g00030 307 MobiDBLite consensus disorder prediction 17 33 - -
Vivi416g00030 307 SMART rrm1_1 155 229 IPR000504 GO:0003723
Vivi416g00030 307 SMART rrm1_1 60 135 IPR000504 GO:0003723
Vivi416g00030 307 SMART rrm1_1 263 307 IPR000504 GO:0003723
Vivi416g00030 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 219 IPR000504 GO:0003723
Vivi416g00030 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 306 IPR000504 GO:0003723
Vivi416g00030 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 126 IPR000504 GO:0003723
Vivi416g00030 307 FunFam Polyadenylate-binding protein RBP45C 145 238 - -
Vivi416g00030 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 139 IPR000504 GO:0003723
Vivi416g00030 307 Gene3D - 239 307 IPR012677 -
Vivi416g00030 307 Gene3D - 11 151 IPR012677 -
Vivi416g00030 307 SUPERFAMILY RNA-binding domain, RBD 152 306 IPR035979 GO:0003676
Vivi416g00030 307 Gene3D - 153 229 IPR012677 -
Vivi416g00030 307 MobiDBLite consensus disorder prediction 233 262 - -
Vivi416g00030 307 CDD RRM2_SECp43_like 153 232 - -
Vivi416g00030 307 MobiDBLite consensus disorder prediction 1 33 - -
Vivi416g00030 307 FunFam Polyadenylate-binding protein RBP45 10 144 - -
Vivi416g00030 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Vivi416g00030 307 SUPERFAMILY RNA-binding domain, RBD 22 139 IPR035979 GO:0003676
Vivi416g00030 307 MobiDBLite consensus disorder prediction 228 262 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi416g00030 61 305 Eukaryotic Initiation Factors Gene Family AT4G34110 26.800 3.86e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi416g00030 - - gmx:100801562 486.878