Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi416g00011 ATGGCCAATTTCACTTCTTTCTCTTCTTCATCTTCCACTCCTCCTCCTCCGCCTTCTTTCTCCTACATTTCAGCTCCGTCTTCTTCTTCCTCAGTTTTCGATGATGACTCTGTTGAGGATTCGTGTAGTATTTGCTTAGAGTCCTTCAGCGTTCATGACCCATCCACTGTTACTTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTTGTCACTGTGGAGGCTGAAAAATGCTTGAGATCCAGAAACAATAATTCATCTTCGCTCGTTAATTCTTCTGTCCCCTTTGAGCGTTTTAATGGTGACCATGATGCTTCTCGCTCAGATGATGTTGATTTTGATGAGCAAATTATGCAGCACCTATATGCCGCTGCACGTAGAGCTCGTTTCATAGAGAGACAGAGAAGACAAGGATCGTCCGGAGCAGGTCCATCAGAGGTATCTGGGGTGCAACCGACTCTTACAACTTCACTCGTTGGTAGTAGTTCTCCGACCACTGGTCTATCATCGACTGCCGACCTTCATCCCGAGGTTGCAAGAAACATTAGCCCTGAGACTGATGTCTCTTACCGACCCAGAGTTCTTTACAGTCTGTCACCACCTCAGGATGGGAGGAAACTAAATACTTCCGAGGTGTTCTCCTTGCCCGAGTCCATCAAATCCAAATTGACTGCTGCTTCAGCCAGATATAAGGAATCAATTTCCAAAAGTACCCGTGGACTCAAAGAGAAGTTACTTGCTCGTAATGTGACAGTGAAAGAGTTGAGTAAAGGTGTTCAGCGGGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGAACTTGCATCAAAAAGGTCTAATTCTCCTATCGTTCCGGTCCGCAATGAGGGAACTTCAGGCTTTCGAAATGAAGCTAGTGGAGGTGTGGTTCAGAATGTTAGTTCAGTTGCTCCCTCACACATTTCTAGCACTGCTGTTGTTAGCCGAATGGAAATTCCTCCACGTGTTCAGAATGGACATGATGCTGTGAAGATTTAA 1113 0.4519 MANFTSFSSSSSTPPPPPSFSYISAPSSSSSVFDDDSVEDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLVTVEAEKCLRSRNNNSSSLVNSSVPFERFNGDHDASRSDDVDFDEQIMQHLYAAARRARFIERQRRQGSSGAGPSEVSGVQPTLTTSLVGSSSPTTGLSSTADLHPEVARNISPETDVSYRPRVLYSLSPPQDGRKLNTSEVFSLPESIKSKLTAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVRNEGTSGFRNEASGGVVQNVSSVAPSHISSTAVVSRMEIPPRVQNGHDAVKI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi416g00011 370 MobiDBLite consensus disorder prediction 1 22 - -
Vivi416g00011 370 MobiDBLite consensus disorder prediction 165 199 - -
Vivi416g00011 370 ProSiteProfiles Zinc finger RING-type profile. 42 82 IPR001841 -
Vivi416g00011 370 MobiDBLite consensus disorder prediction 161 212 - -
Vivi416g00011 370 SUPERFAMILY RING/U-box 37 89 - -
Vivi416g00011 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 98 IPR013083 -
Vivi416g00011 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 91 - -
Vivi416g00011 370 SMART ring_2 42 82 IPR001841 -
Vivi416g00011 370 Pfam Ring finger domain 40 82 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi416g00011 36 90 C3H Transcription Factor Family AT4G00335 47.273 9.95e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi416g00011 K19043 - gmx:100785684 358.607