Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi415g00053 ATGGAGAGACACAAATGCAAGCTTTGTTCAAGAACATTTAGCAATGGAAGAGCACTTGGTGGTCACATGAAGGCTCATCTTGCCATAGCTAAGTCTCAGAAACAACAAACTGTTTTGTTCTCAAACTCTTCATCGGAATCGGAATCGGAACGAGAACAAGAAGATGAGAAAACTTTGGTTAGTTATGGTTTGAGAGAGAATCCAAAGAAGAGTCTGAAGATTGCAGATCCTGGATTTTCTTTCAAACCTGATCAAACTGAGTCTGTTATTGTGCAAGATAGAGAAAGTGAGACTGAGTCAAAGAATAATCCGACTCGTCAACAACGATCTAAACGAATCAGAAAACACATCAACAGCAGCAGCAGCAACCACAACCAGAACTTTGAATTGAAGAAACCAAAAATGAATTTCATGGTGCCAACAGCAACGCAGTTGCCATTCATTGATAGTACTGAACCTGTGAGTTCAGTTTCTGATACTTCTCCGGAAGAAGATGTTGCTATGTGTCTCATGATGCTGTCAAGAGACAAATGGAACAGGAAGAATAACATTAACAATGTGGTGGAACAAGAAGAAGAGGGATCGGTGGAGAAGATACCGAAGGAGAAGTTGTTGAAACGTGTTCGTGGGAAGCATTTATGTGAAAATTGCAGGAAAATGTTCCGGTCTTCAAGAGCATTGGGAAGTCATAGAAGTGTTTGTTGTCGCGATGAAGCGAGGAATGACAGCGGTGTCCATGATAAGATTTTCGAATGTCCGTTTTGTTTTAAGGTGTTTGGTTCCGGTCAAGCACTTGGCGGTCACAAGAGATCTCATTTGATTCCTTCATCATCTAATTCCGCAGCCAATGTTAATGTTAATGCTAATCTGTCTGCTAGATTCAAAGAGAGTTTCATAGATCTCAATTTGCCAGCTCCGCTCGAAGAAGAAGATGATCTTAGCGTTGTTTCGGAAGCCTAA 960 0.4104 MERHKCKLCSRTFSNGRALGGHMKAHLAIAKSQKQQTVLFSNSSSESESEREQEDEKTLVSYGLRENPKKSLKIADPGFSFKPDQTESVIVQDRESETESKNNPTRQQRSKRIRKHINSSSSNHNQNFELKKPKMNFMVPTATQLPFIDSTEPVSSVSDTSPEEDVAMCLMMLSRDKWNRKNNINNVVEQEEEGSVEKIPKEKLLKRVRGKHLCENCRKMFRSSRALGSHRSVCCRDEARNDSGVHDKIFECPFCFKVFGSGQALGGHKRSHLIPSSSNSAANVNVNANLSARFKESFIDLNLPAPLEEEDDLSVVSEA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi415g00053 319 MobiDBLite consensus disorder prediction 37 127 - -
Vivi415g00053 319 MobiDBLite consensus disorder prediction 88 106 - -
Vivi415g00053 319 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 318 IPR044303 GO:0006355
Vivi415g00053 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 272 IPR013087 -
Vivi415g00053 319 SMART c2h2final6 4 26 IPR013087 -
Vivi415g00053 319 SMART c2h2final6 212 232 IPR013087 -
Vivi415g00053 319 SMART c2h2final6 250 272 IPR013087 -
Vivi415g00053 319 Gene3D Classic Zinc Finger 175 280 - -
Vivi415g00053 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Vivi415g00053 319 MobiDBLite consensus disorder prediction 47 63 - -
Vivi415g00053 319 Pfam C2H2-type zinc finger 250 273 - -
Vivi415g00053 319 Pfam C2H2-type zinc finger 3 28 - -
Vivi415g00053 319 SUPERFAMILY beta-beta-alpha zinc fingers 246 273 IPR036236 -
Vivi415g00053 319 SUPERFAMILY beta-beta-alpha zinc fingers 3 231 IPR036236 -
Vivi415g00053 319 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Vivi415g00053 319 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi415g00053 1 316 C2H2 Transcription Factor Family AT3G60580 38.209 1.11e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi415g00053 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi415g00053 - - tpra:123884584 436.032