Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi413g00033 ATGGCTAGTTCTAATCCTACTAATATCATCAATGCTACCAATGATCACAACACATCTTGTTCCAACAATAACCCTATTAGTACTAATAATAACAAGTTGTACAAAGGTGTGAGGAAGAGAAAATGGGGAAAGTGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGACTCACAAGAGAAAGCTGCAAGAGCATTTGATGCAGCTCTTTATTGTCTACGTGGTCCTCAAGCTAGTTTCAATTTTCCTAATACACCTCTTACCATTAATGTAGCTGCTCATAACTCTCTTTCACCACAAGAGATTCAAGAGATTGCAGCTAGGTTTGCCAATGAGTACACACCACCAATTGAGTTGAGTAGTACTCCTGAAGAAGAAGAAGATCAACAAGTGCCATTGTTAGAGTCACAAAATGATGCCAATTCTAATTCTTATTCATCTCCTTTTTATGATAATGAGGGTGATTTGAGGAGGATGGATTGGACATTTGAGGATATGTTGGATGACATGAATAATGGAGTTGCTAATGGCTCTCATTTTGGTTATTATGGGCTAGAAAAGATGCAATACTCGAGTGAGATACAATATTCTAATCAACTTTTTGTGGAGGATAGTGTGGACCAAATTGAATGTGAAGATTCCTTTTCAAACCATTCTCTTTGGAGTTGGAACTTTTGA 699 0.3734 MASSNPTNIINATNDHNTSCSNNNPISTNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSQEKAARAFDAALYCLRGPQASFNFPNTPLTINVAAHNSLSPQEIQEIAARFANEYTPPIELSSTPEEEEDQQVPLLESQNDANSNSYSSPFYDNEGDLRRMDWTFEDMLDDMNNGVANGSHFGYYGLEKMQYSSEIQYSNQLFVEDSVDQIECEDSFSNHSLWSWNF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi413g00033 232 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vivi413g00033 232 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vivi413g00033 232 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vivi413g00033 232 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vivi413g00033 232 MobiDBLite consensus disorder prediction 1 27 - -
Vivi413g00033 232 MobiDBLite consensus disorder prediction 140 156 - -
Vivi413g00033 232 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vivi413g00033 232 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vivi413g00033 232 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vivi413g00033 232 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Vivi413g00033 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 172 - -
Vivi413g00033 232 MobiDBLite consensus disorder prediction 122 156 - -
Vivi413g00033 232 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi413g00033 34 187 AP2-EREBP Transcription Factor Family AT1G74930 54.088 2.75e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi413g00033 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi413g00033 - - vvo:131598518 432.18