Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi413g00022 ATGAAAATGCCTACCAGTGGTAGCCTTAATAGACCAAACACAAACCTCGTAATGGTGGCTGTAGGCAAAGACAAGAACAGTGGCCATGCTTTTCGTTGGACAACTAATAATATTGATAACCCTATCATCATTGCAGTTCATGTTAAACACAAAGATATTCCTCATCAAGAAGGCCAAGATCGCGAAGGCGCCAATGTTTTTCCTCCTGACGAAGATGATGTAGCCAATGTTTTCGAACCCTTACGGGAAATGTGTAATGATAAAGTGGTAAAGATGAAAGAAGCCGTAATCAATGATAGTGACATTGCTAGAGGAATTTCGGAATATGCAAAGAGGAATCATGTTCAACATATCATTGTTGGTGCTCCCTCTAGCTACACCAAGAATGTTCTGTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTACCGACAGCGATAATGAAATCAGCTCCGGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATAGTAGAAACTCGACCAGCAACAGCGCAGTTGGAAAATGCAGTTTCAACAAATGACCTAAGGTCAAGCACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAGATCAGGAAAATCACCAGGATTATCACCCCTACATGATAAACTAAAGAGTTCTTCATCTACTCATAAATCATTGGAGAGTATCGATTTATCGAATCGTGGCCATAGATCATCCTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGCTTACATAAATATGGGCTGGATGCGCCGAAATTAGAGAGGGGTTCGAGCATGGCATCAGATTCTCAAGTATTAGGAGACATGGCAGCTGAGATGAAAGAATTGAGACTCCAACTTAGGCAAACTATGGAAATGTATAACTCAGCTTGCAAAGAAGCAATTTTAGCAAAAAATAAGGCTAAAGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCAATGGCGGAAATAGAGAAAGCTAAAGCAGTGGCTGCATTGAAATCAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACTCAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGTACAGATATTCGATATAGACAATACACCTTAGAGGAGATTGAAAATGCTACTAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGATCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTGCAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTTCTCCTCCTAGGTGCTTGTCAAGATTATGGATGTTTGGTATATGAATACATGGACAATGGTAGTTTAGAAGACAGATTATTTAGAAAACATAATAGCCCTCCAATTCCATGGCAAAAACGTTTAGAAATATGTTACGAAATCGCGACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCCTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTCTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATGTTACATTGATCCTGAATATCAACAAACAGGAAAGTTGACGGCGAAATCTGATATTTATTCTTTAGGTATCATGTTTCTACAAATTATCACTGCTAGGCCTCCAATGGGACTTTCTCATCAAGTTAAAAAGGCTATTGAGAATGGAAATTTTGTCGATATGCTTGATCCCGTTGTTATGGATTGGCCTACTGATGAAGCTTTGGCGTTTGCTAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAGTCGATTAAGAGACTTGGGATGTAAGTTACAGAACTGTCAACAGAATTGGAGCCATGCGCCGCGTCCTCCTACGCCTCCTCGTCCAAGAAGTCCTCCACTTTGA 2136 0.3919 MKMPTSGSLNRPNTNLVMVAVGKDKNSGHAFRWTTNNIDNPIIIAVHVKHKDIPHQEGQDREGANVFPPDEDDVANVFEPLREMCNDKVVKMKEAVINDSDIARGISEYAKRNHVQHIIVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVPTAIMKSAPDYSSVYVIAKEKIVETRPATAQLENAVSTNDLRSSTFKRGGSTNSSRSGKSPGLSPLHDKLKSSSSTHKSLESIDLSNRGHRSSFNHTSSLNENESSRLHKYGLDAPKLERGSSMASDSQVLGDMAAEMKELRLQLRQTMEMYNSACKEAILAKNKAKEINKWKLEERTVEEVMMSREAALAMAEIEKAKAVAALKSVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDIRYRQYTLEEIENATKNFSLSMKIGEGGYGPVFKGQLDHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLFRKHNSPPIPWQKRLEICYEIATALLFLHQTKPESIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTAKSDIYSLGIMFLQIITARPPMGLSHQVKKAIENGNFVDMLDPVVMDWPTDEALAFAKLALSCAELSKKDRPDLALEVIPELSRLRDLGCKLQNCQQNWSHAPRPPTPPRPRSPPL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi413g00022 711 Gene3D HUPs 9 124 IPR014729 -
Vivi413g00022 711 MobiDBLite consensus disorder prediction 190 257 - -
Vivi413g00022 711 SUPERFAMILY Protein kinase-like (PK-like) 395 669 IPR011009 -
Vivi413g00022 711 MobiDBLite consensus disorder prediction 691 711 - -
Vivi413g00022 711 Coils Coil 281 308 - -
Vivi413g00022 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Vivi413g00022 711 Coils Coil 347 385 - -
Vivi413g00022 711 ProSiteProfiles Protein kinase domain profile. 414 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00022 711 MobiDBLite consensus disorder prediction 226 256 - -
Vivi413g00022 711 SMART serkin_6 414 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00022 711 MobiDBLite consensus disorder prediction 697 711 - -
Vivi413g00022 711 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 387 486 - -
Vivi413g00022 711 MobiDBLite consensus disorder prediction 190 211 - -
Vivi413g00022 711 Gene3D Transferase(Phosphotransferase) domain 1 487 694 - -
Vivi413g00022 711 Pfam Protein kinase domain 416 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00022 711 Gene3D Phosphorylase Kinase; domain 1 392 486 - -
Vivi413g00022 711 PANTHER OS02G0152300 PROTEIN 17 686 - -
Vivi413g00022 711 CDD STKc_IRAK 420 680 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi413g00022 92 684 Receptor kinase-like Gene Family AT5G12000 54.133 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi413g00022 PK_Tyr_Ser-Thr 7.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi413g00022 - - gmx:100786386 829.32