Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi413g00021 ATGAAAATGCCTACCAGTGGTAGCCTTAATAGACCAAACACAAACCTCGTAATGGTGGCTGTAGGCAAAGACAAGAACAGTGGCCATGCTTTTCGTTGGACAACTAATAATATTGATAACCCTATCATCATTGCAGTTCATGTTAAACACAAAGATATTCCTCATCAAGGCCAAGATCGCGAAGGCGCCAATGTTTTTCCTCCTGACGAAGATGATGTAGCCAATGTTTTCGAACCCTTACGGGAAATGTGTAATGATAAAGTGGTAAAGATGAAAGAAGCCGTAATCAATGATAGTGACATTGCTAGAGGAATTTCGGAATATGCAAAGAGGAATCATGTTCAACATATCATTGTTGGTGCTCCCTCTAGCTACACCAAGAATGTTCTGTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTACCGACAGCGATAATGAAATCAGCTCCGGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATAGTAGAAACTCGACCAGCAACAGCGCAGTTGGAAAATGCAGTTTCAACAAATGACCTAAGGTCAAGCACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAGATCAGGAAAATCACCAGGATTATCACCCCTACATGATAAACTAAAGAGTTCTTCATCTACTCATAAATCATTGGAGAGTATCGATTTATCGAATCGTGGCCATAGATCATCCTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGCTTACATAAATATGGGCTGGATGCGCCGAAATTAGAGAGGGGTTCGAGCATGGCATCAGATTCTCAAGTATTAGGAGACATGGCAGCTGAGATGAAAGAATTGAGACTCCAACTTAGGCAAACTATGGAAATGTATAACTCAGCTTGCAAAGAAGCAATTTTAGCAAAAAATAAGGCTAAAGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCAATGGCGGAAATAGAGAAAGCTAAAGCAGTGGCTGCATTGAAATCAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACTCAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGTACAGATATTCGATATAGACAATACACCTTAGAGGAGATTGAAAATGCTACTAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGATCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTGCAAGAGGTTGAGGTATTATGCAACATAAGACATCCAAATATGGTTCTCCTCCTAGGTGCTTGTCAAGATTATGGATGTTTGGTATATGAATACATGGACAATGGTAGTTTAGAAGACAGATTATTTAGAAAACATAATAGCCCTCCAATTCCATGGCAAAAACGTTTAGAAATATGTTACGAAATCGCGACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACATTCTCCTAGACAAAAATTTTGTTAGCAAAATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTTCTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCTGGAACATTATGTTACATTGATCCTGAATATCAACAAACAGGAAAGTTGACGGCGAAATCTGATATTTATTCTTTAGGTATCATGTTTCTACAAATTATCACTGCTAGGCCTCCAATGGGACTTTCTCATCAAGTTAAAAAGGCTATTGAGAATGGAAATTTTGTCGATATGCTTGATCCCGTTGTTATGGATTGGCCTACTGATGAAGCTTTGGCGTTTGCTAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGAAGTGATTCCGGAGCTTAGTCGATTAAGAGACTTGGGATGTAAGTTACAGAACTGTCAACAGAATTGGAGCCATGCGCCGCGTCCTCCTACGCCTCCTCGTCCAAGAAGTCCTCCACTTTGA 2133 0.3919 MKMPTSGSLNRPNTNLVMVAVGKDKNSGHAFRWTTNNIDNPIIIAVHVKHKDIPHQGQDREGANVFPPDEDDVANVFEPLREMCNDKVVKMKEAVINDSDIARGISEYAKRNHVQHIIVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVPTAIMKSAPDYSSVYVIAKEKIVETRPATAQLENAVSTNDLRSSTFKRGGSTNSSRSGKSPGLSPLHDKLKSSSSTHKSLESIDLSNRGHRSSFNHTSSLNENESSRLHKYGLDAPKLERGSSMASDSQVLGDMAAEMKELRLQLRQTMEMYNSACKEAILAKNKAKEINKWKLEERTVEEVMMSREAALAMAEIEKAKAVAALKSVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDIRYRQYTLEEIENATKNFSLSMKIGEGGYGPVFKGQLDHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLFRKHNSPPIPWQKRLEICYEIATALLFLHQTKPESIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTAKSDIYSLGIMFLQIITARPPMGLSHQVKKAIENGNFVDMLDPVVMDWPTDEALAFAKLALSCAELSKKDRPDLALEVIPELSRLRDLGCKLQNCQQNWSHAPRPPTPPRPRSPPL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi413g00021 710 Gene3D Phosphorylase Kinase; domain 1 391 485 - -
Vivi413g00021 710 SMART serkin_6 413 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00021 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vivi413g00021 710 CDD STKc_IRAK 419 679 - -
Vivi413g00021 710 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 386 485 - -
Vivi413g00021 710 Pfam Protein kinase domain 415 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00021 710 MobiDBLite consensus disorder prediction 696 710 - -
Vivi413g00021 710 MobiDBLite consensus disorder prediction 225 255 - -
Vivi413g00021 710 PANTHER OS02G0152300 PROTEIN 17 685 - -
Vivi413g00021 710 MobiDBLite consensus disorder prediction 189 210 - -
Vivi413g00021 710 SUPERFAMILY Protein kinase-like (PK-like) 394 668 IPR011009 -
Vivi413g00021 710 ProSiteProfiles Protein kinase domain profile. 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi413g00021 710 Gene3D Transferase(Phosphotransferase) domain 1 486 693 - -
Vivi413g00021 710 Coils Coil 346 384 - -
Vivi413g00021 710 Gene3D HUPs 9 123 IPR014729 -
Vivi413g00021 710 MobiDBLite consensus disorder prediction 690 710 - -
Vivi413g00021 710 MobiDBLite consensus disorder prediction 189 256 - -
Vivi413g00021 710 Coils Coil 280 307 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi413g00021 91 683 Receptor kinase-like Gene Family AT5G12000 54.133 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi413g00021 PK_Tyr_Ser-Thr 7.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi413g00021 - - gmx:100786386 829.706