LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi413g00012	ATGATCAGTTGCACTAACAAAATGACAGAGAGAAATCCAGTAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAGCAATGGTCTTTTGAACTATCTGACTACATGTGTTTCGATGACATTGATTGGCAACAAATTGATCCTACAACTACTAATCAATCTTTTGTTTATCAATCCAACGAAGTAGCAGGTGGCTGCAACATTGAGTGGTCTTCTACTCATACCAGAGATACTAATAACATTAATATGAGTGGAGGAGTGAATAGTTGGAAGAAGGAAGTTAAGGAAAGAGTTGCATTCAAAACAATGACAGAGGTTGAAATACTTGATGATGGTTACAGATGGAGGAAGTATGGAAAGAAAATGGTCAAAAACAGCCCTAATCCAAGGAATTATTATAGGTGTTCAGTGGAGGGATGTCCTGTGAAAAAGAGAGTTGAGAGAGATAAAGATGATTCAAGATATGTCATTACAACCTACGAAGGCATGCACACACACCCAACTTCTTCATAG	519	0.3796	MISCTNKMTERNPVAANSSSPDSDFSNQQWSFELSDYMCFDDIDWQQIDPTTTNQSFVYQSNEVAGGCNIEWSSTHTRDTNNINMSGGVNSWKKEVKERVAFKTMTEVEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKDDSRYVITTYEGMHTHPTSS	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi413g00012	172	Pfam	WRKY DNA -binding domain	112	169	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00012	172	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	29	169	IPR044810	GO:0003700
	Vivi413g00012	172	Gene3D	WRKY domain	98	164	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00012	172	SMART	WRKY_cls	111	170	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00012	172	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vivi413g00012	172	ProSiteProfiles	WRKY domain profile.	106	171	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00012	172	SUPERFAMILY	WRKY DNA-binding domain	103	170	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi413g00012	172	FunFam	WRKY transcription factor 57	97	171	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi413g00012	54	168	WRKY Transcription Factor Family	AT5G26170	56.349	1.20e-41	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi413g00012		WRKY	3e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi413g00012	-		-	gmx:100796836	186.808